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. Author manuscript; available in PMC: 2020 Apr 8.
Published in final edited form as: Dev Cell. 2019 Feb 21;49(1):63–76.e10. doi: 10.1016/j.devcel.2019.01.018
Symbol Description Value Reference
kphos,0 Basal Phosphorylation Rate Constant per site when Ftension= 0 1 s−1 This study: matched to experimental detachment data in wild-type cells. See parameter sensitivity analysis Fig. S4D.
λ Scaling factor that determines the influence of tension on the phosphorylation rate constant 1 pN−1 Free parameter, see sensitivity analysis in Fig. S4A and Fig. 4D.
Ftension Centromere tension 2.8, 3.3, 44.9 pN Matched to experimental average tension values for wild-type and tension mutant cells
β Sensitivity factor that scaled the fraction of phosphorylated sites with the probability of detachment 10−4 This study: matched to experimental detachment data in wild-type cells. See sensitivity analysis Fig. S4B.
Nsites Total number of phosphorylation Sites in the kinetochore 1–50 Simulation is insensitive to this parameter (Fig. S4); see sensitivity analysis Fig. S4C.
Nphos Number of phosphorylated sites 1–50 Determined based on phosphorylation event; varies at each time step in simulation
Δtstep Simulation time step size 0.01 s N/A
kdephos Dephosphorylation rate constant 1 s−1 This study: matched to experimental detachment data in wild-type cells
Δtreattach Time to reattach a detached kinetochore 210+(rand*60) sec; where rand = uniformly distributed random number between 0 and 1 (Kalinina et al., 2013)
tdur Simulation duration 20 min Metaphase time in budding yeast. (Pearson et al., 2001)