kphos,0
|
Basal Phosphorylation Rate Constant per site when Ftension= 0 |
1 s−1
|
This study: matched to experimental detachment data in wild-type cells. See parameter sensitivity analysis Fig. S4D. |
λ |
Scaling factor that determines the influence of tension on the phosphorylation rate constant |
1 pN−1
|
Free parameter, see sensitivity analysis in Fig. S4A and Fig. 4D. |
Ftension
|
Centromere tension |
2.8, 3.3, 44.9 pN |
Matched to experimental average tension values for wild-type and tension mutant cells |
β |
Sensitivity factor that scaled the fraction of phosphorylated sites with the probability of detachment |
10−4
|
This study: matched to experimental detachment data in wild-type cells. See sensitivity analysis Fig. S4B. |
Nsites
|
Total number of phosphorylation Sites in the kinetochore |
1–50 |
Simulation is insensitive to this parameter (Fig. S4); see sensitivity analysis Fig. S4C. |
Nphos
|
Number of phosphorylated sites |
1–50 |
Determined based on phosphorylation event; varies at each time step in simulation |
Δtstep
|
Simulation time step size |
0.01 s |
N/A |
kdephos
|
Dephosphorylation rate constant |
1 s−1
|
This study: matched to experimental detachment data in wild-type cells |
Δtreattach
|
Time to reattach a detached kinetochore |
210+(rand*60) sec; where rand = uniformly distributed random number between 0 and 1 |
(Kalinina et al., 2013) |
tdur
|
Simulation duration |
20 min |
Metaphase time in budding yeast. (Pearson et al., 2001) |