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. Author manuscript; available in PMC: 2019 May 27.
Published in final edited form as: Methods Enzymol. 2018 Aug 14;607:53–90. doi: 10.1016/bs.mie.2018.05.005

Table 3.

Calculated Activation Barrier (in kcal/mol) for Diester Hydrolysis in the Active-Site Model of AP in the Gas Phase (see Fig. 1)

Single Points at DFTB3
Geometries
Single Points at B3LYP
Geometries
Substrate DFTB3 B3LYP M06 MP2 B3LYP M06 MP2
MpNPP 8.8 9.2 (4.2a) 5.7 (3.1) 7.6 12.0 (6.7) 6.8 (6.1) 8.8
MmNPP 9.7 9.2 (9.4) 6.8 (7.5) 13.6 15.3 (12.0) 13.2 (12.8) 13.2
MPP 20.0 16.2 (9.1) 11.6 (7.1) 9.6 20.1 (11.6) 13.0 (10.8) 10.4
a

The number with parentheses is obtained with corresponding DFT functional plus D3 dispersion. The geometries are optimized either at DFTB3/3OB or B3LYP/6-31+G(d,p) level. Single point energy calculations are carried out at B3LYP, M06, and MP2 method at two levels of geometries using a larger basis set of 6-311++G(d,p).