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. Author manuscript; available in PMC: 2020 Jul 1.
Published in final edited form as: Neuroimage. 2019 Mar 17;194:272–282. doi: 10.1016/j.neuroimage.2019.03.021

Figure 2.

Figure 2.

Automated cropping scheme for THOMAS- the mean template is cropped manually with a desired crop mask (ranging in size from unilateral and bilateral thalamus to the whole brain). An affine registration between the template and the input is performed and the crop mask warped to the input space to crop generate a cropped input image.