Table 1. HPV sequences identified in eyebrow hair follicles using the pan-PV CODEHOP PCR.
| HPV/SIBX sequence | HPV species | Novel sequence | Closely related type (%) | No. of positive samples | ||
|---|---|---|---|---|---|---|
| (Accesion no.) | Type | Subtype | Variant | (Prevalence, %) | ||
| HPV6 (X00203) | Alpha-10 | x | 1 (0.7 %) | |||
| HPV11 (M14119) | Alpha-10 | x | 1 (0.7 %) | |||
| HPV5 (M17463) | Beta-1 | x | 1 (0.7 %) | |||
| HPV12 (X74466) | Beta-1 | x | 17 (11.4 %) | |||
| HPV21 (U31779) | Beta-1 | x | 2 (1.3 %) | |||
| HPV24 (U31782) | Beta-1 | x | 1 (0.7 %) | |||
| HPV118 (GQ246951) | Beta-1 | x | 1 (0.7 %) | |||
| HPV124 (GQ845446) | Beta-1 | x | 1 (0.7 %) | |||
| HPVRTRX7 (U85660) | Beta-1 | x | 1 (0.7 %) | |||
| SIBX22 (LK022298) | Beta-1 | x | HPV118 (88.0 %) | 3 (2.0 %) | ||
| SIBX25 (LK022301) | Beta-1 | x | HPV124 (91.3 %) | 3 (2.0 %) | ||
| SIBX62 (KP768220) | Beta-1 | x | HPV12 (93.2 %) | 1 (0.7 %) | ||
| SIBX65 (KP768223) | Beta-1 | x | HPV124 (88.9 %) | 1 (0.7 %) | ||
| HPV9 (X74464) | Beta-2 | x | 8 (5.4 %) | |||
| HPV15 (X74468) | Beta-2 | x | 9 (6.0 %) | |||
| HPV37 (U31786) | Beta-2 | x | 2 (1.3 %) | |||
| HPV38 (U31787) | Beta-2 | x | 1 (0.7 %) | |||
| HPV174 (HF930491) | Beta-2 | x | 4 (2.7 %) | |||
| HPV122 (GQ845444) | Beta-2 | x | 4 (2.7 %) | |||
| SIBX26 (LK022302) | Beta-2 | x | HPV113 (84.1 %) | 3 (2.0 %) | ||
| SIBX29 (LK022305) | Beta-2 | x | HPV209 (97.4 %) | 3 (2.0 %) | ||
| SIBX61 (KP768219) | Beta-2 | x | HPV174 (86.1 %) | 1 (0.7 %) | ||
| SIBX63 (KP768221) | Beta-2 | x | HPV174 (94.1 %) | 1 (0.7 %) | ||
| HPV75 (Y15173) | Beta-3 | x | 4 (2.7 %) | |||
| HPV115 (FJ947080) | Beta-3 | x | 1 (0.7 %) | |||
| SIBX59 (KP768217) | Beta-3 | x | HPV76 (96.6 %) | 2 (1.3 %) | ||
| SIBX64 (KP768222) | Beta-3 | x | SIBX59 (97.6 %) | 1 (0.7 %) | ||
| HPV150 (FN677755) | Beta-5 | x | 3 (2.0 %) | |||
| SIBX54 (LM653102) | Beta-5 | x | HPV96 (83.0 %) | 7 (4.7 %) | ||
| SIBX42 (LK022318) | Gamma-1 | x | HPV158 (83.6 %) | 1 (0.7 %) | ||
| SIBX44 (LK022320) | Gamma-1 | x | SIBX42 (99.7 %) | 1 (0.7 %) | ||
| SIBX45 (LK022321) | Gamma-1 | x | HPV158 (83.3 %) | 10 (6.7 %) | ||
| SIBX33 (LK022309) | Gamma-8 | x | mSE37 (75.2 %) | 1 (0.7 %) | ||
| SIBX37 (LK022313) | Gamma-8 | x | SIBX33 (97.9 %) | 1 (0.7 %) | ||
| SIBX35 (LK022311) | Gamma-9 | x | HPV129 (73.4 %) | 1 (0.7 %) | ||
| HPV142 (HM999994) | Gamma-10 | x | 1 (0.7 %) | |||
| SIBX39 (LK022315) | Gamma-10 | x | HPV142 (85.4 %) | 11 (7.4 %) | ||
| SIBX57 (KP768215) | Gamma-11 | x | HPV126 (89.5 %) | 1 (0.7 %) | ||
| SIBX60 (KP768218) | Gamma-11 | x | SIBX57 (98.4 %) | 2 (1.3 %) | ||
| HPV165 (JX444072) | Gamma-12 | x | 1 (0.7 %) | |||
| SIBX23 (LK022299) | Gamma-12 | x | mCG3 (78.6 %) | 2 (1.3 %) | ||
| SIBX27 (LK022303) | Gamma-12 | x | mCG3 (86.5 %) | 5 (3.4 %) | ||
| SIBX34 (LK022310) | Gamma-12 | x | HPV165 (80.2 %) | 1 (0.7 %) | ||
| SIBX40 (LK022316) | Gamma-12 | x | HPV157 (77.9 %) | 2 (1.3 %) | ||
| SIBX41 (LK022317) | Gamma-12 | x | SIBX40 (99.3 %) | 3 (2.0 %) | ||
| SIBX50 (LK022326) | Gamma-12 | x | HPV157 (99.7 %) | 1 (0.7 %) | ||
| SIBX43 (LK022319) | Gamma-15 | x | HPV179 (78.3 %) | 2 (1.3 %) | ||
| SIBX38 (LK022314) | Gamma-17 | x | HPV144 (75.8 %) | 1 (0.7 %) | ||
| SIBX24 (LK022300) | Gamma-18 | x | HPV156 (87.3 %) | 1 (0.7 %) | ||
| HPV161 (JX413109) | Gamma-19 | x | 1 (0.7 %) | |||
| SIBX47 (LK022323) | Gamma-19 | x | HPV166 (92.3 %) | 3 (2.0 %) | ||
| SIBX49 (LK022325) | Gamma-19 | x | HPV166 (86.1 %) | 1 (0.7 %) | ||
| SIBX51 (LM653099) | Gamma-19 | x | mZJ01 (74.9 %) | 2 (1.3 %) | ||
| SIBX55 (LM653103) | Gamma-19 | x | SIBX51 (99.7 %) | 7 (4.7 %) | ||
| SIBX58 (KP768216) | Gamma-19 | x | HPV166 (84.8 %) | 1 (0.7 %) | ||
| SIBX56 (LM653104) | Gamma-20 | x | HPV163 (80.8 %) | 5 (3.4 %) | ||
| SIBX28 (LK022304) | Gamma-24 | x | mFD1 (83.0 %) | 14 (9.4 %) | ||
| SIBX30 (LK022306) | Gamma-24 | x | mSE355 (79.3 %) | 4 (2.7 %) | ||
| SIBX31 (LK022307) | Gamma-24 | x | mFD1 (83.9 %) | 16 (10.7 %) | ||
| SIBX32 (LK022308) | Gamma-24 | x | SIBX31 (99.7 %) | 1 (0.7 %) | ||
| SIBX36 (LK022312) | Gamma-24 | x | mFD1 (86.3 %) | 1 (0.7 %) | ||
| SIBX46 (LK022322) | Gamma-24 | x | SIBX31 (97.9 %) | 8 (5.4 %) | ||
| SIBX48 (LK022324) | Gamma-24 | x | mKN1 (99.1 %) | 8 (5.4 %) | ||
| SIBX52 (LM653100) | Gamma-24 | x | SIBX30 (91.0 %) | 1 (0.7 %) | ||
| SIBX53 (LM653101) | Gamma-24 | x | HPV197 (80.2 %) | 6 (4.0 %) | ||
| TOTAL | 48 | 10 | 7 | |||
SIBX, novel putative HPV types/subtypes/variants identified in this study.