Table 4. Main results obtained using a de novo approach on the random amplification meta-transcriptomic dataset used in an investigation of a mass die-off of saiga antelopes, Kazakhstan, 2015*.
| Read area | No. contigs† | Total length, bp | Attribution‡ | Comment |
|---|---|---|---|---|
| 796 | 2 | 271 | Pasteurella bettyae CCUG 2042 | |
| 1,758,115 | 162 | 27,999 | Ovis canadensis canadensis | Host |
| 1,676,355 | 23 | 5,780 | Capra hircus (goat) | |
| 36,795 | 7 | 1,287 | Bubalus bubalis (water buffalo) | |
| 30,763 | 14 | 1,959 | Bos taurus (cattle) | |
| 3,252 | 6 | 1,366 | Saiga tatarica | |
| 2,625 | 8 | 1,283 | Ovis aries (sheep) | |
| 2,414 | 5 | 969 | Bos indicus | |
| 1,650 | 2 | 317 | Eudorcas thomsonii (Thomson’s gazelle) | |
| 14,221,307 | 6,641 | 2,103,430 | Pasteurella multocida | Other |
| 69,009 | 195 | 27036 | Unknown sequence | |
| 35,246 | 1 | 401 | Uncultured eukaryote | |
| 796 | 2 | 271 | Pasteurella bettyae CCUG 2042 |
*Equivalent to the contig length × the average read coverage. †Number of contigs with the same attribution. ‡As determined by the best blastn hit.