Table 3.
Barcode markers developed in this study.
Marker ID | Primer Sequence (5′–3′) | Product Size a | Location |
---|---|---|---|
Ls/Pj/Gl (bp) | |||
CNV01 | F: GGTCAAATACCTAGCGACAA | 308/272/254 | ycf2 |
R: TTATGCAAGGAGACATTGCT | |||
CNV02 | F: CATCCATATCCCAATTCCAT | 305/371/305 | trnN-GUU ~ ycf1 |
R: GCTCGGAGAAGGAAGAGATA | |||
CNV03 | F: CATTGAGTGCACCCTATACA | 404/386/368 | psaC ~ ndhE |
R: TCGTAACAGAAAATCAACTCG | |||
InDel01 | F: AACGAATCCTACGGTTTCTC | 266/289/269 | trnS-GCU ~ trnR-UCU |
R: TGTCGAACAGGGATAATTTG | |||
InDel02 | F: TCTCGCTTTTTAGTCAGTTTG | 380/379/416 | ndhF ~ rpl32 |
R: GCCTAATGAAAAGCCTAATGA | |||
InDel03 | F: CAGGAGGATAGCAAGTTACAA | 412/571/571 | rps12 ~ trnV-GAC |
R: CAACGCCACTATTCTTGAAC | |||
InDel04 | F: CTATATGTATATACAATAACGAATCA | 652/198/633 | trnE-UUC ~ trnT-GGU |
R: GTTCAAGAATAGTGGCGTTG | |||
IR01 | LSC P: CCTAGCTGCTGTTGAAGCTC | na/576/na | psbA |
Control F: GACGACTGAGCCAACTTGAT | 262/262/262 | psbH ~ petB | |
Control R: TCGAGACGTTCTTCAAACCA | |||
nrDNA01 | Specific F: GTTAACAATTAGGGCGAGCA | na/na/291 | ITS1 |
Control F: GCATCGATGAAGAACGTAGC | 78/78/78 | 5.8S | |
Control R: GCGTTCAAAGACTCGATGGT |
a Amplicon size expected for each of the three species. Ls, Ledebouriella seseloides; Pj, Peucedanum japonicum; and Gl, Glehnia littoralis. na, not amplified.