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. 2019 May 9;20(9):2301. doi: 10.3390/ijms20092301
NMR Nuclear Magnetic Resonance
CPU Central Processing Unit
GPU graphics processing unit
Cryo-EM cryo-electron microscopy
PDB Protein Data Bank
CASP Critical Assessment of techniques for Structure Prediction
CHARMM Chemistry at Harvard Macromolecular Mechanics
SVM Support Vector Machine
NAMD Nanoscale Molecular Dynamics
LDDT Local Distance Difference Test on All Atoms
TBM Template-Based Modelling
FM Free Modelling
MQAPs Model Quality Assessment Programs
MD Molecular Dynamics
DFIRE Distance-Scaled, Finite-Ideal Gas Reference
DDFIRE Dipolar Distance-Scaled, Ideal Gas Reference
RWplus Random Walk reference state Plus
GDT-TS Global Distance Test Total Score
GDT_HA Global Distance Test High Accuracy
SphGr SphereGrinder
RMSD Root mean square deviation
TM-Score Template Modeling Score