Table 1. Mutations in haemagglutinin 1 of viral sequences recovered from an infected patient and from environmental samples collected nearby, compared to candidate vaccine strain A/Guangdong/17SF003/2016(H7N9), Inner Mongolia Autonomous region, China, April 2019a .
Strain name | Passage | Sites number (H7 numbering) | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9 | 22 | 47b | 71 | 78 | 114b | 116 | 125b | 134b | 151 | 163 | 169 | 184 | 261 | 301 | ||
A/Guangdong/17SF003/2016(H7N9) | E1 | A | R | R | E | I | G | T | V | S | A | K | I | K | R | K |
A/Gansu/23277/2019(H7N9) | Original | S | K | K | K | V | R | K | T | P | T | R | V | R | G | R |
A/Gansu/23276/2019(H7N9) | Original | S | K | K | K | V | R | K | A/T | P | T | R | V | R | G | R |
A/Gansu/23275/2019(H7N9) | Original | S | K | K | K | V | R | K | A/T | P | T | R | V | R | G | R |
A/Gansu/23277/2019(H7N9) | E1 | S | K | K | K | V | R | E | T | P | T | R | V | R | G | R |
A/Gansu/23276/2019(H7N9) | E1 | S | K | K | K | V | R | K | A | P | T | R | V | R | G | R |
A/Gansu/23275/2019(H7N9) | E1 | S | K | K | K | V | R | K | A | P | T | R | V | R | G | R |
A/Gansu/23447/2019(H7N9) | E1 | S | K | K | K | V | R | K | T | P | T | R | V | R | G | R |
A/Gansu/23453/2019(H7N9) | E1 | S | K | K | K | V | R | K | A | P | T | R | V | R | G | R |
A/Environment/Inner Mongolia/23280/2019(H7N9) | Original | S | K | K | K | V | R | K | T | P | T | R | V | R | G | R |
A/Environment/Inner Mongolia/23286/2019(H7N9) | Original | S | K | K | K | V | R | K | T | P | T | R | V | R | G | R |
A/Environment/Inner Mongolia/23287/2019(H7N9) | E1 | S | K | K | K | V | R | K | T | P | T | R | V | R | G | R |
A/Environment/Inner Mongolia/23286/2019(H7N9) | E1 | S | K | K | K | V | R | K | T | P | T | R | V | R | G | R |
A/Environment/Inner Mongolia/23285/2019(H7N9) | E1 | S | K | K | K | V | R | K | T | P | T | R | V | R | G | R |
A/Environment/Inner Mongolia/23283/2019(H7N9) | E1 | S | K | K | K | V | R | K | T | P | T | R | V | R | G | R |
A/Environment/Inner Mongolia/23280/2019(H7N9) | E1 | S | K | K | K | V | R | K | T | P | T | R | V | R | G | R |
A/Environment/Inner Mongolia/23278/2019(H7N9) | E1 | S | K | K | K | V | R | K | T | P | T | R | V | R | G | R |
NA: not applicable.
a Environmental samples were collected 4 days after the first specimen was obtained from the patient.
b Previously reported immune escape mutation.