Table 1.
Summary statistics of the near complete genomes obtained for the 9 HIV-1 samples studied.
| Sample | Total reads | Mean length of reads (nt) | Contigs | Ambiguities (N’s) | Assembly length (nt) | HXB2 coverage | Depth of coverage |
|---|---|---|---|---|---|---|---|
| 79 | 55 | 740.49 | 1 | 25 | 8987 | 0.92 | 4.53 |
| 93 | 60 | 540.03 | 2 | 354 | 8922 | 0.87 | 3.66 |
| 678 | 10 | 665.30 | 1 | 4 | 4016 | 0.41 | 1.66 |
| 703 | 47 | 586.17 | 1 | 0 | 8994 | 0.91 | 3.06 |
| 724 | 53 | 558.04 | 1 | 84 | 9012 | 0.90 | 3.29 |
| 2011 | 54 | 613.93 | 2 | 396 | 8852 | 0.86 | 3.92 |
| 2104 | 35 | 599.49 | 2 | 352 | 8934 | 0.88 | 2.44 |
| 3011 | 33 | 694.88 | 1 | 0 | 8961 | 0.91 | 2.56 |
| 3164 | 9 | 883.00 | 2 | 2538 | 7379 | 0.49 | 1.64 |