Table 2.
Support of each putative recombination event detected by the different methods implemented in RDP4.
| Sample (MP)a | Event | Subtype | Start | End | RDP | GENECONV | Bootscan | Maxchi | Chimera | SiSscan | 3Seq |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 79 (F1) | 1∗∗ | B | 2470 | 3707 | 2.23E-09 | NS | 3.21E-11 | 8.77E-07 | 3.87E-07 | NS | 4.88E-14 |
| 93 (F1) | 1∗∗ | B | 2471 | 3708 | 5.38E-09 | NS | 1.92E-11 | 3.26E-07 | 7.95E-08 | NS | 4.88E-14 |
| 678 (G) | 1∗∗ | B | 2592 | 4802 | 3.60E-16 | NS | 1.31E-16 | 6.21E-19 | 5.28E-22 | 2.98E-12 | 5.36E-39 |
| 703 (G) | 1∗∗ | B | 2558 | 4803 | 1.13E-38 | 8.23E-04 | 8.96E-31 | 1.92E-17 | 7.25E-21 | 1.34E-15 | 4.88E-14 |
| 2R | U(D) | 8697 | 8860 | NS | NS | NS | 9.82E-06 | 2.91E-03 | NS | 2.07E-02 | |
| 724 (G) | 1∗∗ | B | 2559 | 4804 | 1.29E-39 | 1.11E-03 | 1.54E-40 | 1.29E-18 | 6.97E-22 | 3.22E-17 | 4.88E-14 |
| 2R | H | 7337 | 7612 | 1.75E-03 | 1.77E-03 | NS | 3.70E-03 | 8.03E-04 | NS | NS | |
| 2011(A1) | 1∗∗ | D | 2161 | 3069 | 6.96E-08 | NS | 9.57E-04 | 2.12E-04 | 1.78E-07 | NS | 6.31E-10 |
| 2R | U(F) | 3070 | 5923 | 4.30E-02 | NS | NS | 6.10E-04 | 9.32E-03 | 5.03E-10 | 2.44E-14 | |
| 3R∗∗ | D | 6077 | 9384 | 6.13E-06 | NS | 2.42E-08 | 1.05E-05 | 7.31E-10 | 7.91E-09 | 8.30E-13 | |
| 2104 (A1) | 1∗∗ | D | 2135 | 3252 | 7.84E-09 | NS | 3.86E-03 | 3.16E-08 | 5.42E-09 | NS | 7.25E-12 |
| 2R | U(F2) | 3253 | 5924 | NS | NS | NS | 1.36E-05 | 2.66E-02 | 1.41E-11 | 2.44E-14 | |
| 3R∗∗ | D | 6078 | 9384 | 5.51E-04 | NS | 1.25E-05 | 1.02E-12 | 5.99E-12 | 9.09E-08 | 2.44E-14 | |
| 3011 (A1) | 1R | C | 1526 | 1989 | 1.47E-02 | NS | 1.58E-02 | 6.05E-03 | NS | NS | 1.43E-02 |
| 2R | U(F1) | 2169 | 3238 | NS | NS | NS | 1.34E-02 | 4.64E-02 | NS | 1.49E-05 | |
| 3R | F2 | 3449 | 5662 | NS | NS | NS | 8.89E-03 | 7.98E-03 | NS | 5.90E-05 | |
| 7∗∗ | K | 6109 | 6486 | 1.19E-05 | NS | 1.96E-05 | 1.72E-03 | 4.07E-04 | NS | 4.56E-02 | |
| 4R | U(C)) | 6608 | 6847 | 2.39E-02 | NS | NS | NS | NS | 4.11E-04 | 7.59E-03 | |
| 5R | U(F2) | 8335 | 9385 | NS | NS | NS | 1.03E-04 | 1.22E-05 | 4.29E-09 | NS | |
| 3164 (A1) | 1R∗ | K | 2727 | 3031 | 7.20E-04 | NS | 1.51E-03 | NS | NS | NS | 2.70E-03 |
| 2R | F2 | 6079 | 6345 | 1.74E-07 | NS | 2.16E-05 | 1.32E-04 | 1.92E-05 | NS | 3.69E-05 |
Asterisks indicate events confirmed by ELW (best topology) and phylogenetic signal (unresolved quartets, UQ < 0.25). ∗Supported by ELW; ∗∗Supported by ELW + Phylogenetic signal. aMajor parental.