Table 1. Sequencing data generated for the eight samples and negative controls.
| Sample ID | Disease manifestation | Age/Sex | ZIKV IgM (serum) | CHIKV IgM and IgG (serum) | DENV IgM and IgG (serum) | Sample collection date | CHIKV qRT-PCR Ct value | Genome coverage depth | Ratio of de novo and African->Asian SNPs > |
|---|---|---|---|---|---|---|---|---|---|
| PCR reaction (H2O) C- | _ | _ | 1641.92 | _ | |||||
| Serum C- | _ | _ | 1033.73 | _ | |||||
| #199P195 | Classical CHIKV | 59/male | IgM ind | IgM- IgG+ | IgM- IgG+ | 07-04-2016 | 31 | 7232.20 | 15/23 |
| #97P95 | Classical CHIKV | 25/female | IgM - | IgM- IgG- | IgM- IgG+ | 06-01-2016 | 13 | 10538.00 | 9/8 |
| #43P41 | Classical CHIKV | 71/male | IgM - | IgM- IgG- | IgM- IgG+ | 05-17-2016 | 13 | 6943.42 | 5/6 |
| #89P87 | Acute Tranv. Myelitis | 62/male | IgM - | IgM+ IgG+ | IgM- IgG+ | 05-31-2016 | 32 | 7653.14 | 8/59 |
| #290P274 | Optic Neuritis | 43/male | IgM - | IgM- IgG- | IgM ind IgG- | 07-25-2016 | 32 | 5749.48 | 0/20 |
| #53P41 | Acute Tranv. Myelitis | 22/male | IgM - | IgM- IgG- | IgM- IgG+ | 03-30-2016 | 32 | 8298.55 | 8/133 |
| #7P7 | Polymyositis | 22/male | IgM - | IgM+ IgG+ | IgM- IgG- | 03-30-2016 | 32 | 2201.24 | 2/7 |
| #315P290 | Polymyositis | 30/male | IgM - | IgM+ IgG+ | IgG- IgM- | 08-16-2016 | 31 | 2701.50 | 4/39 |