Table 2. Top taxa within endobronchial stent biofilm PAM types.
| Biofilm Type | > 1% Taxa | Proportion of Total Reads | |
|---|---|---|---|
| 1 | Staphylococcus (g) | 0.289 | |
| Parvimonas (g) | 0.119 | ||
| Campylobacter (g) | 0.0957 | ||
| Anaerococcus (g) | 0.0859 | ||
| Peptoniphilus (g) | 0.0684 | ||
| Streptococcus (g) | 0.0594 | ||
| Veillonella (g) | 0.0547 | ||
| Rothia (g) | 0.0331 | ||
| Pseudomonas (g) | 0.0290 | ||
| Oribacterium (g) | 0.0266 | ||
| Corynebacterium (g) | 0.0246 | ||
| Porphyromonas (g) | 0.0243 | ||
| Finegoldia (g) | 0.0189 | ||
| Bulleidia (g) | 0.0185 | ||
| Actinomyces (g) | 0.0184 | ||
| 2 | Corynebacterium (g) | 0.860 | |
| Anaerococcus (g) | 0.0469 | ||
| Actinomyces (g) | 0.0241 | ||
| Staphylococcus (g) | 0.0141 | ||
| 3 | Pseudomonas (g) | 0.162 | |
| Streptococcus (g) | 0.146 | ||
| Prevotella (g) | 0.121 | ||
| Corynebacterium (g) | 0.106 | ||
| Fusobacterium (g) | 0.0745 | ||
| Mycoplasma (g) | 0.0744 | ||
| Veillonella (g) | 0.0568 | ||
| Enterobacteriaceae (f) | 0.0391 | ||
| Actinomyces (g) | 0.0267 | ||
| Neisseriaceae (f) | 0.0260 | ||
| Rothia (g) | 0.0209 | ||
| Campylobacter (g) | 0.0182 | ||
| Neisseria (g) | 0.0142 | ||
| Parvimonas (g) | 0.0133 | ||
| Enterococcus (g) | 0.0133 | ||
| Anaerococcus (g) | 0.0130 | ||
Taxa reflecting >1% of reads across all stents within the biofilm type are listed, with their relative abundances, grouped at the genus (g) or family (f) level.