Table 3. Fungal reads identified in endobronchial stents.
| Sample IDA | Taxonomic AssignmentB,C | Read CountC |
|---|---|---|
| 0002-L-474 | Candida albicans (s) | 5190 |
| Phlebia (g) | 4982 | |
| Yuchengia narymica (s) | 4018 | |
| Steccherinum (g) | 3502 | |
| Mycoacia fuscoatra (s) | 3273 | |
| Fungi (k) | 3245 | |
| Trametes gibbosa (s) | 3075 | |
| Irpex lacteus (s) | 3005 | |
| 0018-L-287 | Candida albicans (s) *2 OTU’s | 12654 |
| 0018-L-301 | Candida albicans (s) | 9824 |
| Piptoporus betulinus (s) | 5023 | |
| 0018-L-548 | Scedosporium boydii (s) | 20098 |
| Stereum (g) | 10012 | |
| Trametes versicolor (s) | 7086 | |
| Hypholoma sublateritium (s) | 5106 | |
| Trechispora stellulata (s) | 4802 | |
| Phlebia (g) | 4245 | |
| Peniophora (g) | 3864 | |
| Sisotrema (g) | 3325 | |
| Burgoa verzuoliana (s) | 3232 | |
| Phlebia radiate (s) | 3038 | |
| 0048-L-287 | Candida albicans (s) | 17057 |
| 0048-L-475 | Trametes versicolor (s) | 5510 |
| Stereum (g) | 4070 | |
| 0777-R-67 | Cystofilobasidiium infirmominiatum (s) | 7915 |
| Saccharomyces (g) | 4956 | |
| Sistotrema brinkmannii (s) | 4166 | |
| 0777-R-098 | Aspergillus (g) | 111651 |
| Sistotrema brinkmannii (s) | 5813 | |
| Irpex lacteus (s) | 3707 | |
| 8001-R-XXXX | Sarcinomyces (g) | 23361 |
| 0895-R-157 | Aspergillus (g) | 7842 |
| Cladosporium (g) | 4243 | |
| 0935-L-079 | Candida glabrata (s) | 10599 |
| 0935-R-079 | Candida glabrata (s) | 7582 |
| 0937-R-163 | Candida glabrata (s) | 21282 |
| Candida tropicalis (s) | 11226 | |
| 0985-R-130 | Candida albicans (s) | 24303 |
| 0988-R-051 | Aspergillus (g) | 29169 |
| 0099-L-143 | Candida albicans (s) | 41296 |
| Candida glabrata (s) | 3552 | |
| 0099-L-262 | Uncultured fungus (p) | 6987 |
| 0099-R-199 | Uncultured fungus (p) | 18322 |
| 0991-L-317 | Daedaleopsis (g) | 4511 |
| Sterileswab1 | Cladosporium (g) *2 OTU’s | 7817 |
Taxa with ≥3000 reads in a sample are shown, along with the number of reads.
ASample ID corresponds to those of Fig 5.
BTaxa are shown at the most precise level that could be assigned, as species (s), genus (g), family (f), phylum (p), or in one case no better than kingdom (k).
CTaxa with greater than 10,000 reads in a sample are shown in bold.