Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2019 May 30;20:438. doi: 10.1186/s12864-019-5827-6

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

PMC Copyright notice

Fig. 1 — Maximum-likelihood (ML) phylogeny based on 16S rRNA gene sequences of Acidithiobacillus spp. Seven validated species are assigned into five clades, including A. caldus (Clade I), A. ferrooxidans (Clade II), A. thiooxidans (3A in Clade III), A. albertensis (3B in Clade III), A. ferrivorans (4A in Clade IV), A. ferriphilus (4B in Clade IV), and A. ferridurans (Clade V). These species are highlighted in different colors. Several strains of interest in various minor branches are also marked in this phylogenetic tree, including A. caldus strains DX (1), ZJ (2), ZBY (3), SM-1 (4), MTH-04 (5), A. ferrooxidans ATCC 53993 (6), Acidithiobacillus sp. GGI-221 (7), A. thiooxidans strains A01 (8), A02 (9), DMC (10), JYC-17 (11), BY-02 (12), ZBY (13), DXS-W (14), CLST (15), GD1-3 (16), A. ferrivorans strains YL15 (17), PRJEB5721 (18), CF27 (19), A. ferrooxidans BY0502 (20), and Acidithiobacillus sp. SH. Other branches representing unclear species are shown in black color. More details about these 602 16S rRNA gene sequences used in ML tree construction and their clade assignments are listed in Additional file 2: Table S2.