Table 1.
Assembly statistics.
| Dicyema sp. genomic | Dicyema sp. 454 | Dicyema sp. | Dicyema japonicum | Dicyema sp.genomic filtered∗ | Dicyema sp. 454 filtered∗∗ | Dicyema sp. filtered∗∗ | Dicyema japonicum filtered∗∗ | |
|---|---|---|---|---|---|---|---|---|
| Assembly size (bp) | 858,248,066 | 19,669,371 | 64,598,656 | 44,413,963 | N/A | N/A | N/A | N/A |
| Contigs/transcripts (>500 bp) | 939,453 | 22,115 | 52,176 | 29,091 | N/A | N/A | N/A | N/A |
| Predicted genes/peptides | 984,055 | 12,379 | 22,286 | 11,330 | 21,842 | 11,726 | 21,656 | 11,233 |
| Complete BUSCOs, eukaryota_odb9 | 77.6% | 65.0% | 82.2% | 85.1% | 71.3% | 62.0% | 80.2% | 84.2% |
| Complete and single-copy BUSCOs (S) | 74.6% | 63.0% | 77.9% | 82.5% | 68.3% | 60.7% | 76.6% | 81.2% |
| Complete and duplicated BUSCOs (D) | 3.0% | 2.0% | 4.3% | 2.6% | 3.0% | 1.3% | 3.6% | 3.0% |
| Fragmented BUSCOs (F) | 14.2% | 22.8% | 9.2% | 6.6% | 11.6% | 23.1% | 10.2% | 6.6% |
| Missing BUSCOs (M) | 8.2% | 12.2% | 8.6% | 8.3% | 17.1% | 14.9% | 9.6% | 9.2% |
∗Genomic predictions were filtered by retaining only hits to the InterPro database and cleaned from the cephalopod contamination with BLAST searches against the NCBI nr database. ∗∗Transcriptome assemblies were filtered with BLAST searches against the RefSeq database as detailed in Materials and Methods, Section “Assembly and Filtering of Dicyemid Sequences.”