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. 2019 May 28;7:e6958. doi: 10.7717/peerj.6958

Table 2. Twelve microsatellite loci were developed for SSR markers and their amplification in the three species tested (Waikham et al., 2018).

Primers SSR motif Primer sequence (5′–3′) Amplification size range (bp)
L. polystachyus C.tribuloides C.calathiformis
CT097 (ATT)n F: HEX-CGACTTTGGGAAGGAAATAAAGG 140–152 139–175 126–144
R: TGGACTTCAACTTGCCATAGTG
CT110 (TGT)n F: TAMRA-TTCTTCAGTTAGCCACATCG 172–184 169–205 173–179
R: CGCTAAGTCCATACATACAACAG
CT113 (TTC)n F: HEX-CCACTCGTAGCAGCCAATAATA 114–195 144–171 115–175
R: CCACTCGTAGCAGCCAATAATA
CT127 (AGA)n F: TAMRA-CCCAGAAAACGTATGATCTTTG 191–254 207–246 172–250
R: CCATGCAACACTACCTCGTC
CT128 (TCA)n F: TAMRA-CCCTTGGCAGACAAACTAGATA 168–186 160–244 172–193
R: GGCGCAACAACATATGAAGAAT
CT132 (AT)n(AAG)n F: TAMRA-TGACCCGAGCATGGTTTAT 158–203 126–174 178–208
R: GGACGTTAGGCCTGTACATT
CT135 (TGA)n(GAA)n F: FAM-GCCTAGCTTATGGAGTGGTT 116–146 124–160 123–165
R: GTCTTTGTGCAAGTGCTC
CT149 (TCT)n F: FAM-GCGCGTGACTTAGGCTCTTCAC 142–166 144–150 140–161
R: CTTCTCTGTTGGCATTTCTTGC
CT159 (TCT)n F: FAM-ATCCATGTCCACTTCTTCAA 132–159 130–193 133–148
R: CGTTTCCAAAACGAAGAAC
CT161 (CAC)n F: FAM-AACGATACTAGCGACCTTGA 145–166 136–166 139–166
R: GCGAAAAACGCTCTCCAAC
CT164 (CAC)n F: HEX-ACAACACACCTAACATCACAAC 146–164 129–174 132–159
R: GAATGTTGCTCAGCGAAG
CT165 (CTT)n F: HEX-AGCGCCTTCTTAATAGAACC 153–186 112–149 119–161
R: TGGTGACCATTACTTGTTGA