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. 2019 May 28;7:e6991. doi: 10.7717/peerj.6991

Table 2. Top 25 differentially expressed mRNAs in TSCC samples.

Top 25 up-regulated mRNAs Top 25 down-regulated mRNAs
mRNA Description logFC logCPM PValue FDR mRNA Description logFC logCPM PValue FDR
HOXC8 homeobox C8 5.283727 0.312936 4.53E–19 2.79E–17 PRB3 proline rich protein BstNI subfamily 3 −9.70388 4.872374 7.81E–98 1.40E–93
BMP1 bone morphogenetic protein 1 2.198072 6.638635 3.16E—18 1.81E–16 PRH1 proline rich protein HaeIII subfamily 1 −7.72276 2.560288 3.04E–94 2.72E–90
MFAP2 microfibril associated protein 2 3.188861 6.042071 5.08E–18 2.81E–16 LCN1 lipocalin 1 −11.3997 8.089483 3.38E–79 2.02E–75
PLAU plasminogen activator, urokinase 3.005871 8.32712 8.47E–18 4.60E–16 PRR4 proline rich 4 −8.31566 5.865882 2.35E–76 1.05E–72
C1QTNF6 C1q and TNF related 6 3.264884 5.673275 4.53E–17 2.27E–15 OMG oligodendrocyte myelin glycoprotein −4.8649 −0.11353 1.75E–73 6.28E–70
CD276 CD276 molecule 2.09334 7.165463 7.14E–17 3.48E–15 RSPH4A radial spoke head component 4A −5.17019 0.179478 1.19E–65 3.57E–62
SERPINH1 serpin family H member 1 2.511446 8.51167 7.17E–17 3.48E–15 KRT85 keratin 85 −7.19377 0.580109 2.80E–62 7.16E–59
COL13A1 serpin family H member 1 2.529188 2.474665 1.74E–16 8.05E–15 RSPH1 radial spoke head component 1 −5.36305 0.850217 1.37E–61 3.06E–58
HOXC6 homeobox C6 4.461024 1.226607 2.93E–16 1.34E–14 VWA3B von Willebrand factor A domain containing 3B −4.96649 0.321375 1.12E–59 2.24E–56
TGFBI transforming growth factor beta induced 3.851308 10.07835 1.11E–15 4.78E–14 ZG16B zymogen granule protein 16B −8.05015 7.996396 1.76E–57 3.16E–54
HOXC4 homeobox C4 3.777635 1.189556 1.40E–15 6.00E–14 C6orf58 chromosome 6 open reading frame 58 −8.42169 4.31457 1.14E–56 1.86E–53
HSD17B6 hydroxysteroid 17-beta dehydrogenase 6 2.405452 1.277905 5.23E–15 2.07E–13 ZMYND10 zinc finger MYND-type containing 10 −5.1136 1.208837 6.75E–54 1.01E–50
LAMC2 laminin subunit gamma 2 3.836815 10.61456 5.85E–15 2.29E–13 DNAH9 dynein axonemal heavy chain 9 −4.73983 1.343683 2.57E–53 3.54E–50
GRIN2D glutamate ionotropic receptor NMDA type subunit 2D 4.331032 3.546628 9.64E–15 3.69E–13 C9orf24 chromosome 9 open reading frame 24 −4.84518 −0.09058 4.11E–53 5.26E–50
PDPN podoplanin 2.695333 7.36453 2.52E–14 9.09E–13 CFAP43 cilia and flagella associated protein 43 −4.37867 0.383593 4.26E–52 5.09E–49
IL11 interleukin 11 3.881345 3.0041 3.16E–14 1.12E–12 ECT2L epithelial cell transforming 2 like −4.08998 −1.00566 2.97E–51 3.33E–48
CA9 carbonic anhydrase 9 5.962956 5.020682 3.36E–14 1.18E–12 PIFO primary cilia formation −4.33282 0.834553 9.28E–51 9.51E–48
P3H1 prolyl 3-hydroxylase 1 2.182197 5.66245 4.70E–14 1.63E–12 FAM166B family with sequence similarity 166 member B −3.57818 −0.50684 9.55E–51 9.51E–48
LBX2 ladybird homeobox 2 2.707215 −0.43299 1.27E–13 4.15E–12 LRRC46 leucine rich repeat containing 46 −4.07671 0.796168 7.59E–50 7.16E–47
ZNF114 zinc finger protein 114 3.990454 2.237109 1.33E–13 4.32E–12 TEKT1 tektin 1 −5.7258 0.094967 4.01E–49 3.59E–46
SNX10 sorting nexin 10 2.139152 4.011967 1.34E–13 4.32E–12 WDR38 WD repeat domain 38 −5.66533 −0.23915 1.25E–48 1.07E–45
DNMT3B DNA methyltransferase 3 beta 2.4099 3.445032 1.42E–13 4.57E–12 PRB4 proline rich protein BstNI subfamily 4 −9.41497 −0.08209 3.81E–47 3.10E–44
TMEM132A transmembrane protein 132A 2.071182 7.053422 1.75E–13 5.51E–12 EFHB EF-hand domain family member B −4.48575 −0.84504 5.50E–47 4.28E–44
HOXC9 homeobox C9 3.908623 0.666057 2.46E–13 7.54E–12 ERICH3 glutamate rich 3 −6.91452 0.213528 1.66E–46 1.24E–43
ARTN artemin 3.278099 3.346497 2.76E–13 8.34E–12 LPO lactoperoxidase −6.76434 1.46561 3.06E–46 2.20E–43