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MR49F versus LNCaP, 1% FDR, 2FC cutoff
Total, up-regulated, and down-regulated transcripts differentially expressed (FDR < 0.01 and 2-fold cutoff) between, respectively, enzalutamide-resistant/enzalutamide-sensitive cells using the three different packages Cufflinks, edgeR, and DESeq2.
| Total | Up-regulated in resistant cells | Down-regulated in resistant cells | |
|---|---|---|---|
| DESeq2 | 1627 | 738 | 889 |
| edgeR | 2320 | 1026 | 1294 |
| Cufflinks | 1279 | 719 | 560 |
