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C4–2R versus C4–2, 1% FDR, 2FC cutoff
Total, up-regulated, and down-regulated transcripts differentially expressed (FDR < 0.01 and 2-fold cutoff) between, respectively, enzalutamide-resistant/enzalutamide-sensitive cells using the three different packages Cufflinks, edgeR, and DESeq2.
| Total | Up-regulated in resistant cells | Down-regulated in resistant cells | |
|---|---|---|---|
| DESeq2 | 2331 | 1206 | 1125 |
| edgeR | 3121 | 1554 | 1567 |
| Cufflinks | 1737 | 871 | 866 |
