Table 2.
Strain REY15A CRISPR spacers showing perfect, or near perfect, base pairing matches to the SIRV3 and SMV1 genomes. The sequence corresponding to spacer 2_115 is duplicated at the termini of the SIRV3 genome. CRISPR spacer 1_83 denotes spacer 83 of CRISPR locus 1. SIRV3-matching spacers also exist in the strain LAL14/1 genome with 0 mismatches (1 spacer), 1 mismatch (4 spacers) and two and three mismatches (2 of each).
| virus | CRISPR locus_spacer |
base pair mismatch |
protospacer location |
|---|---|---|---|
| SIRV3 | 1_83 | 0 | 15,953–15,914 |
| “ | 2_115 | 0 | 255–293/32,741–32,703 |
| “ | 2_66 | 1 | 24,473–24,513 |
| “ | 2_100 | 1 | 21,721–21,761 |
| “ | 1_84 | 2 | 8088–8050 |
| “ | 2_45 | 2 | 18,398–18,437 |
| SMV1 | 2_87 | 1 | 25,475–25,514 |