Table 4.

Total host and viral transcript yields. Total numbers of transcript reads after subtracting rRNA reads are given with the percentage of reads matching host and viral genomes.

sample	dpi	total reads	SiRe (%)	SIRV3 (%)	SMV1 (%)
uninfected	5	10,520,901	100	0	0
SIRV3	4	12,241,903	99.90	0.10	0
SIRV3 + SMV1	2	14,132,316	99.74	0.22	0.04
	2.5	12,883,680	99.55	0.35	0.10
	3	53,000,092	84.38	14.85	0.77
	3.5	17,546,875	92.01	7.10	0.89
	4.5	14,433,285	89.63	4.75	5.62