Table 3.

Summary of runs of homozygosity (ROH), pools of ROH, F_ST SNP windows, and F_ST INDEL windows by chromosome in TT population in all animals from 7th and 16th generations

GGA	Size (Mb)	Number of ROH	Number of pools	Number of FST SNP windows (≥ 0.3)	Number of FST INDEL windows (≥ 0.3)
1	196.20	1230	415	53	65
2	149.56	1087	338	28	28
3	111.30	609	228	28	23
4	91.28	582	212	5	4
5	59.83	392	137	6	9
6	35.47	211	77	4	5
7	36.95	267	85	17	21
8	29.96	213	66	1	2
9	24.09	106	39	6	10
10	20.44	106	39	–	2
11	20.22	114	36	1	1
12	19.95	90	41	–	–
13	18.41	107	35	1	2
14	15.60	101	32	–	1
15	12.76	81	32	–	–
17	10.96	72	22	–	–
18	11.05	87	28	1	–
19	9.98	61	16	–	2
20	14.11	54	19	–	–
21	6.86	26	7	–	–
22	4.73	13	4	2	3
23	5.79	21	7	1	–
24	6.28	30	12	–	–
25	2.91	7	1	–	–
26	5.31	9	1	–	–
27	5.66	16	5	–	–
28	4.97	25	6	–	–
33	1.65	4	1	–	–