Table 1.

Nanopore sequencing data sets used to evaluate DeepMod

Genome	Data set name	Motif	# reads	Coverage	Metha	Reference
Escherichia coli	UMR	NAd	111,238	110X	Negb	Simpson et al. 4
	CG_MsssI	CGc	69,899	67X	5mC
	CG_SssI	CGc	8679	19X	5mC
	CG_MpeI	CGc	23,593	39X	5mC
	GCGC_HhaI	GCGCc	18,180	50X	5mC
	gaAttc_EcoRI	GAATTCc	16,661	27X	6mA	Stoiber et al. 3
	gAtc_dam	GATCc	17,557	33X	6mA
	tcgA_TaqI	TCGAc	16,249	22X	6mA
	Con1	NAd	23,762	34X	Negb
	Con2	NAd	34,170	40X	Negb
Homo sapiens	NA12878	CGc		30X	5mC	Jain et al. 31
	HX1	CGc	4,827,155	30X	5mC	Current study
Chlamydomonas reinhardtii	C. reinhardtii	NAd	772,817	126X	6mA	Current study

^a Methylation types

^b Negative control without any modifications

^c Underlined nucleotides in motifs were potential modified target.

^d No modifications or no motif information