Table 2.

MHC Class I and Class II probesets significantly differentially regulated in multibacillary, paucibacillary and resilient cohorts of sheep.

Ovine MHC Class	Bovine Probeset ID	Ovine Gene Symbol	Ovine accession #	Gene Title	Fold Change
					Multibacillary	Paucibacillary	Resilient
MHC I	Bt.28022.1.A1_s_at	Class I MHC Ovar-N	LT984574	Ovis aries BOLA class I Ovar-N) allele 25:01	−2.7	−1.7
	Bt.29824.1.S1_s_at	Class I MHC Ovar-N	LT984574	Ovis aries BOLA class I Ovar-N) allele 25:01	−4.2	−3.1
	Bt.22767.1.S1_at	LOC101104866	XM_015091331	Ovis aries musimon BOLA class I antigen	−2.0	−2.1
	Bt.29814.1.S1_at	LOC101104866	XM_015091331	Ovis aries musimon BOLA class I antigen	−2.4	−3.0	−2.0
	Bt.5324.1.S1_s_at	LOC101104866	XM_015091331	Ovis aries musimon BOLA class I antigen	−1.4
	Bt.4762.1.S1_at	LOC101113217	XM_015105290	Ovis aries BOLA class I alpha chain BL3-7-like	1.6	1.5
	Bt.3805.1.S1_at	LOC105612701	XM_012163337	Ovis aries musimon BOLA class I alpha chain BL3-7	1.6	1.4
MHC II	Bt.4751.2.S1_a_at	MHC Ovar DQA2	M93431	Ovis aries Merino class II DQ alpha 2.2		−1.7
	Bt.22867.1.S1_x_at	LOC101108696	NM_001159759	Ovis aries boLa class II DQ alpha			1.8
	Bt.22867.2.A1_at	MHC Ovar DQA2	NM_001308598	Ovis aries HLA class II DQ alpha 2	−2.1		−2.9
	Bt.13510.1.S1_at	LOC101109219	XM_012112137	Ovis aries musimon class II DO beta chain	−1.5
	Bt.350.1.S1_at	MHC-DQB2	XM_012173129	Ovis aries musimon boLa class II DQB*0101 beta	1.5
	Bt.350.1.S1_s_at	MHC-DQB2	XM_012173129	Ovis aries musimon boLa class II DQB*0101 beta	3.1	3.4	2.9
	Bt.350.1.S1_x_at	MHC-DQB2	XM_012173129	Ovis aries musimon boLa class II DQB*0101 beta	1.5