Table 1.
Exons reactive to NMD knockdown (q < 0.05) with cognate eCLIP peaks within 200 nts. Some exons have two slightly different variants. Exon coordinates are in GRCh37 genome assembly.
| Gene | Exon | ΔΨUPF1 | ΔΨSMG6 | −log (q) |
|---|---|---|---|---|
| SRSF1 | chr17:56082759-56082961 | −0.30 | −0.15 | 1.6 |
| HNRNPL | chr19:39332253-39332322 | 0.64 | 0.48 | 16.0 |
| SRSF7 | chr2:38976040-38976488 | 0.28 | 0.20 | 1.9 |
| RBM5 | chr3:50137965-50138038 | −0.29 | −0.29 | 1.6 |
| BCLAF1 | chr6:136590279-136590348 | 0.52 | 0.46 | 13.9 |
| BCLAF1 | chr6:136590279-136590441 | 0.55 | 0.47 | 15.5 |
| TRA2A | chr7:23561751-23562051 | 0.65 | 0.49 | 15.4 |
| TRA2A | chr7:23561973-23562051 | 0.65 | 0.51 | 15.6 |