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. 2019 May 30;177(6):1619–1631.e21. doi: 10.1016/j.cell.2019.04.013
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

α-gfp monoclonal antibody Santa Cruz sc-9996
goat α-mouse HRP polyclonal antibody Bio-Rad 172-1011
Bacterial and Virus Strains
Rosetta (DE3) E.coli strain Merck Millipore 70954
BL21 (DE3) E.coli strain NEB C2527l

Chemicals, Peptides, and Recombinant Proteins

S. cerevisiae Pab1 fl and derivatives Schäfer et al., 2014; this paper N/A
S. cerevisiae Pan2-Pan3 and derivatives Schäfer et al., 2014; this paper N/A
S. cerevisiae Ccr4-Caf1-Not1 Basquin et al., 2012 N/A
H. sapiens PAN2, PAN3 and PABPC1 This paper N/A
Phusion High-Fidelity PCR Master Mix NEB M0531S
All used restriction enzymes NEB N/A
T7-polymerase Produced in house N/A
DNaseI (RNase-free) Thermo Fisher Scientific AM2222
T4 RNA ligase 1 NEB M0204S
RNase A (Biochemistry Grade) Ambion AM2274
CIP NEB M0290S
T4 Polynucleotide Kinase NEB M0201S
Proteinase K NEB P8107S
ATP [γ-32P] PerkinElmer NEG002A100UC
pCp [5’-32P] PerkinElmer NEG019A250UC
acid phenol:chloroform Ambion AM9720
phenol:chloroform:isoamylalkohol (25:24:1) Ambion AM9730
chloroform:isoamylalkohol SIGMA-ALDRICH 25668
NuPAGE 4-12% Bis-Tris protein gels Thermo Fisher Scientific NP0336BOX
8–16% stain-free protein SDS-PAGE gels Bio-Rad 4568106
Sf-900 II SFM insect cell medium Thermo Fisher Scientific 10902-104
Amersham ECL prime detection reagent GE Healthcare RPN2232

Deposited Data

EMDB This paper EMD: 4728
PDB This paper PDB: 6R5K

Experimental Models: Cell Lines

Trichoplusia ni Hi5 cells Thermo Fisher Scientific B85502
Spodoptera frugiperda Sf21 cells Thermo Fisher Scientific 11497013
S. cerevisiae BY4743 strain Euroscarf http://www.euroscarf.de/index.php?name=News

Experimental Models: Organisms/Strains

isogenic to S. cerevisiae BY4741 This paper WT
pan2-EGFP::kanMX4 in S. cerevisiae BY4741 background This paper Pan2-EGFP
(Δ1-340)-pan2-EGFP::kanMX4 in S. cerevisiae BY4741 background This paper Pan2ΔWD40-EGFP
(Δ1-340)-pan2-D1020A-EGFP::kanMX4 in S. cerevisiae BY4741 background This paper Pan2ΔWD40/cat-EGFP
Δpan2::klURA3 in S. cerevisiae BY4741 background This paper ΔPan2
Pan2::His3MX6 in S. cerevisiae BY4741 background This paper Pan2::His3
(Δ1-340)-pan2::His3MX6 in S. cerevisiae BY4741 background This paper Pan2ΔWD40

Oligonucleotides

homo-oligomeric poly(A) RNAs of defined length ELLA Biotech N/A

Recombinant DNA

ORFs cloned from genomic DNA of S.cerevisiae BY4743 strain and human IMAGE clones Schäfer et al., 2014; http://www.imageconsortium.org/; this paper N/A
pcDNA-3.1 (+) Thermo Fisher Scientific V79020

Software and Algorithms

MotionCor2 Zheng et al., 2017 https://msg.ucsf.edu/em/software/motioncor2.html
Gctf Zhang, 2016 https://www.mrc-lmb.cam.ac.uk/kzhang/Gctf/
Gautomatch N/A https://www.mrc-lmb.cam.ac.uk/kzhang/Gautomatch/
RELION3.0 Zivanov et al., 2018 https://github.com/3dem/relion
sxviper Penczek et al., 1994 http://sphire.mpg.de/
phenix.real_space_refine Afonine et al., 2018b https://www.phenix-online.org/
phenix.mtriage Afonine et al., 2018a https://www.phenix-online.org/
Coot Emsley et al., 2010 https://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/
PyMOL2 N/A https://pymol.org/2/
ChimeraX Goddard et al., 2018 https://www.cgl.ucsf.edu/chimerax/
ConSurf 2016 Ashkenazy et al., 2016 http://consurf.tau.ac.il/2016/
ImageJ N/A https://fiji.sc/#
Tidyverse N/A https://www.tidyverse.org/

Other

Quantifoil holey carbon grids Quantifoil N/A
Superdex200 16/60 column GE Healthcare 28-9893-35
Superose 6 3.2/300 column GE Healthcare 29-0915-98
Superdex75 16/60 column GE Healthcare 17-1068-01
Mono Q 5/50 GL column GE Healthcare 17-5166-01
Strep-Tactin Sepharose IBA lifescience 2-1201-002
Glutathion Sepharose 4 Fast Flow GE Healthcare 17-5132-01
HIS-Select HF Nickel Affinity Gel Sigma-Aldrich H0537-25ML
Heparin Sepharose 6 Fast Flow GE Healthcare 17-0998-01
GFPtrap agarose beads Chromotek Gta-20
Sepharose 4b GE Healthcare 17-0120-01