Antibodies |
|
α-gfp monoclonal antibody |
Santa Cruz |
sc-9996 |
goat α-mouse HRP polyclonal antibody |
Bio-Rad |
172-1011 |
Bacterial and Virus Strains |
Rosetta (DE3) E.coli strain |
Merck Millipore |
70954 |
BL21 (DE3) E.coli strain |
NEB |
C2527l |
|
Chemicals, Peptides, and Recombinant Proteins |
|
S. cerevisiae Pab1 fl and derivatives |
Schäfer et al., 2014; this paper |
N/A |
S. cerevisiae Pan2-Pan3 and derivatives |
Schäfer et al., 2014; this paper |
N/A |
S. cerevisiae Ccr4-Caf1-Not1 |
Basquin et al., 2012 |
N/A |
H. sapiens PAN2, PAN3 and PABPC1 |
This paper |
N/A |
Phusion High-Fidelity PCR Master Mix |
NEB |
M0531S |
All used restriction enzymes |
NEB |
N/A |
T7-polymerase |
Produced in house |
N/A |
DNaseI (RNase-free) |
Thermo Fisher Scientific |
AM2222 |
T4 RNA ligase 1 |
NEB |
M0204S |
RNase A (Biochemistry Grade) |
Ambion |
AM2274 |
CIP |
NEB |
M0290S |
T4 Polynucleotide Kinase |
NEB |
M0201S |
Proteinase K |
NEB |
P8107S |
ATP [γ-32P] |
PerkinElmer |
NEG002A100UC |
pCp [5’-32P] |
PerkinElmer |
NEG019A250UC |
acid phenol:chloroform |
Ambion |
AM9720 |
phenol:chloroform:isoamylalkohol (25:24:1) |
Ambion |
AM9730 |
chloroform:isoamylalkohol |
SIGMA-ALDRICH |
25668 |
NuPAGE 4-12% Bis-Tris protein gels |
Thermo Fisher Scientific |
NP0336BOX |
8–16% stain-free protein SDS-PAGE gels |
Bio-Rad |
4568106 |
Sf-900 II SFM insect cell medium |
Thermo Fisher Scientific |
10902-104 |
Amersham ECL prime detection reagent |
GE Healthcare |
RPN2232 |
|
Deposited Data |
|
EMDB |
This paper |
EMD: 4728 |
PDB |
This paper |
PDB: 6R5K
|
|
Experimental Models: Cell Lines |
|
Trichoplusia ni Hi5 cells |
Thermo Fisher Scientific |
B85502 |
Spodoptera frugiperda Sf21 cells |
Thermo Fisher Scientific |
11497013 |
S. cerevisiae BY4743 strain |
Euroscarf |
http://www.euroscarf.de/index.php?name=News |
|
Experimental Models: Organisms/Strains |
|
isogenic to S. cerevisiae BY4741 |
This paper |
WT |
pan2-EGFP::kanMX4 in S. cerevisiae BY4741 background |
This paper |
Pan2-EGFP |
(Δ1-340)-pan2-EGFP::kanMX4 in S. cerevisiae BY4741 background |
This paper |
Pan2ΔWD40-EGFP |
(Δ1-340)-pan2-D1020A-EGFP::kanMX4 in S. cerevisiae BY4741 background |
This paper |
Pan2ΔWD40/cat-EGFP |
Δpan2::klURA3 in S. cerevisiae BY4741 background |
This paper |
ΔPan2 |
Pan2::His3MX6 in S. cerevisiae BY4741 background |
This paper |
Pan2::His3 |
(Δ1-340)-pan2::His3MX6 in S. cerevisiae BY4741 background |
This paper |
Pan2ΔWD40
|
|
Oligonucleotides |
|
homo-oligomeric poly(A) RNAs of defined length |
ELLA Biotech |
N/A |
|
Recombinant DNA |
|
ORFs cloned from genomic DNA of S.cerevisiae BY4743 strain and human IMAGE clones |
Schäfer et al., 2014; http://www.imageconsortium.org/; this paper |
N/A |
pcDNA-3.1 (+) |
Thermo Fisher Scientific |
V79020 |
|
Software and Algorithms |
|
MotionCor2 |
Zheng et al., 2017 |
https://msg.ucsf.edu/em/software/motioncor2.html |
Gctf |
Zhang, 2016 |
https://www.mrc-lmb.cam.ac.uk/kzhang/Gctf/ |
Gautomatch |
N/A |
https://www.mrc-lmb.cam.ac.uk/kzhang/Gautomatch/ |
RELION3.0 |
Zivanov et al., 2018 |
https://github.com/3dem/relion |
sxviper |
Penczek et al., 1994 |
http://sphire.mpg.de/ |
phenix.real_space_refine |
Afonine et al., 2018b |
https://www.phenix-online.org/ |
phenix.mtriage |
Afonine et al., 2018a |
https://www.phenix-online.org/ |
Coot |
Emsley et al., 2010 |
https://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/ |
PyMOL2 |
N/A |
https://pymol.org/2/ |
ChimeraX |
Goddard et al., 2018 |
https://www.cgl.ucsf.edu/chimerax/ |
ConSurf 2016 |
Ashkenazy et al., 2016 |
http://consurf.tau.ac.il/2016/ |
ImageJ |
N/A |
https://fiji.sc/# |
Tidyverse |
N/A |
https://www.tidyverse.org/ |
|
Other |
|
Quantifoil holey carbon grids |
Quantifoil |
N/A |
Superdex200 16/60 column |
GE Healthcare |
28-9893-35 |
Superose 6 3.2/300 column |
GE Healthcare |
29-0915-98 |
Superdex75 16/60 column |
GE Healthcare |
17-1068-01 |
Mono Q 5/50 GL column |
GE Healthcare |
17-5166-01 |
Strep-Tactin Sepharose |
IBA lifescience |
2-1201-002 |
Glutathion Sepharose 4 Fast Flow |
GE Healthcare |
17-5132-01 |
HIS-Select HF Nickel Affinity Gel |
Sigma-Aldrich |
H0537-25ML |
Heparin Sepharose 6 Fast Flow |
GE Healthcare |
17-0998-01 |
GFPtrap agarose beads |
Chromotek |
Gta-20 |
Sepharose 4b |
GE Healthcare |
17-0120-01 |