Table 3.
Haplotypes of MC1R variants above MAF 0.001
| Haplotype | rs312262906 | rs1805005 | rs1805006 | rs2228479 | rs11547464 | rs1805007 | rs1805008 | rs885479 | rs1805009 | rs555179612 | rS201326893 | rs1110400 | HF |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 2 3 4 5 6 7 8 9 10 11 12 |
C C C C C C C C C C CA |
G T G G G G G G G G G |
C C C C C C C A C C C |
G G A G G G G G G G G |
G G G G G G G G G A G |
C C C T C C C C C C C |
C C C C T C C C C C C |
G G G G G A G G G G G |
G G G G G G C G G G G |
T T T T T T T T T T T |
C C C C C C C C C C C |
T T T T T T T T C T T |
5.0e-1 1.2e-1 9.5e-2 8.9e-2 7.3e-2 4.9e-2 2.2e-2 1.3e-2 1.1e-2 7.0e-3 4.2e-3 |
| C | G | C | G | G | C | C | G | G | TC | C | T | 1.6e-3 |
In each haplotype, the minor allele is highlighted in boldface-italics. The top haplotype is wild type. Every other haplotype carries only one variant’s minor allele. HF is haplotype frequency.