Table 1.
Sample | Raw reads | Clean reads | Error | Q20 | Q30 | GC |
---|---|---|---|---|---|---|
Female-1-1 | 19757381 | 13615230 | 0.03 | 96.81 | 93.42 | 48.92 |
Female-1-2 | 19757381 | 13615230 | 0.03 | 95.56 | 91.42 | 48.92 |
Female-2-1 | 19500137 | 13249659 | 0.03 | 96.67 | 93.12 | 49.79 |
Female-2-2 | 19500137 | 13249659 | 0.03 | 95.83 | 91.88 | 49.79 |
Female-3-1 | 16918995 | 16322468 | 0.03 | 96.70 | 91.61 | 48.96 |
Female-3-2 | 16918995 | 16322468 | 0.03 | 96.72 | 91.61 | 48.95 |
Male-1-1 | 14492850 | 13853200 | 0.03 | 95.56 | 92.03 | 46.69 |
Male-1-2 | 14492850 | 13853200 | 0.03 | 95.61 | 92.00 | 46.78 |
Male-2-1 | 15806041 | 12193814 | 0.03 | 96.88 | 93.80 | 47.18 |
Male-2-2 | 15806041 | 12193814 | 0.03 | 95.73 | 91.97 | 47.14 |
Male-3-1 | 17961443 | 13498787 | 0.03 | 96.54 | 93.11 | 46.25 |
Male-3-2 | 17961443 | 13498787 | 0.03 | 95.45 | 91.30 | 46.33 |
Pseudomales-1-1 | 19970045 | 13033818 | 0.03 | 97.05 | 94.08 | 47.09 |
Pseudomales-1-2 | 19970045 | 13033818 | 0.03 | 95.40 | 91.43 | 46.98 |
Pseudomales-2-1 | 21633228 | 12794338 | 0.03 | 96.41 | 92.76 | 48.13 |
Pseudomales-2-2 | 21633228 | 12794338 | 0.04 | 94.95 | 90.50 | 48.02 |
Pseudomales-3-1 | 18792243 | 12507202 | 0.03 | 96.99 | 94.00 | 46.91 |
Pseudomales-3-2 | 18792243 | 12507202 | 0.03 | 94.98 | 90.76 | 46.80 |