Table III.

Known or novel splicing events detected from ABLas.

Known splicing events
Sample	3pMXE	5pMXE	A3SS	A3SS&ES	A5SS	A5SS&ES	ES	IntronR	MXE	Cassette exon	Totalb	Detected junctionc
shCtrl_1st	274	562	2614	296	3177	385	2058	1013	233	1463	12075	134568
shCtrl_2nd	181	383	1729	197	2103	277	1359	953	139	923	8244	114474
shCK18_1st	189	399	1838	202	2222	307	1460	959	135	1000	8711	119159
shCK18_2nd	224	451	2319	255	2725	371	1759	1009	194	1199	10506	128578
All samplesa	362	733	3455	384	4118	515	2573	1443	322	1881	15786	147540
Novel splicing events
Sample	3pMXE	5pMXE	A3SS	A3SS&ES	A5SS	A5SS&ES	ES	IntronR	MXE	Cassette exon	Totalb	Detected junctiond
shCtrl_1st	612	1654	3795	485	5032	574	1872	3782	205	660	18671	46290
shCtrl_2nd	341	972	2644	321	3395	390	1382	3072	120	401	13038	22297
shCK18_1st	381	1061	2737	360	3494	407	1485	3466	104	396	13891	24036
shCK18_2nd	503	1420	3305	391	4101	490	1642	3647	139	508	16146	34627
All samplesa	1313	3282	8950	1201	10843	1360	4380	7750	416	1451	40946	86961

^aNumbers in this line indicate the unique alternative splicing events identified from all four samples. Since many ASEs were detected in more than one sample, the numbers in this line are less than the sum of the four individual numbers.

^bIndicates the sum of all different types of alternative splicing events detected in each sample or all samples.

^cIndicates the known spliced junctions detected in each sample or all samples.

^dIndicates the novel spliced junctions detected in each sample or all samples. ASEs, alternative splicing events.