Table 1.
For each species, number of individuals analyzed per location and population, number of PCR-cycles used for library building, average number and standard deviation (SD) of forward reads retained per individual and average depth coverage per locus when applying m = 3, M = 2 parameters, before (above) and after (below) removing PCR clones.
| Species | Location | Population | n | PCR-cycles | Average number of reads | Average depth coverage (m = 3, M = 2) | NCBI BioProject |
|---|---|---|---|---|---|---|---|
| European green crab (Carcinus maenas) | Brudenell River | North | 22 | 14 | 6,750,558 (SD: 2,594,048) 2,389,818 (SD: 767,861) | 221x 93.6x | PRJNA377723 |
| Cole Harbour | North | 22 | 14 | ||||
| Campobello Island | South | 22 | 14 | ||||
| Tuckerton | South | 22 | 14 | ||||
| Atlantic mackerel (Scomber scombrus) | East Canada | West Atlantic | 29 | 14 | 3,161,222 (SD: 1,630,037) 1,905,752 (SD: 902,165) | 43x 33x | PRJNA310297 |
| Bay of Biscay | East Atlantic | 22 | 14 | ||||
| Adriatic Sea | East Mediterranean | 20 | 14 | ||||
| Western Mediterranean | West Mediterranean | 16 | 14 | ||||
| Deep sea scallop (Placopecten magellanicus) | Sunnyside | North | 20 | 13 | 7,198,343 (SD: 1,807,699) 1,924,472 (SD: 1,433,721) | 171x 58.3x | PRJNA340326 |
| Little Bay | North | 21 | 18 | ||||
| Magdalen Islands | North | 21 | 18 | ||||
| Gulf of Main | South | 20 | 18 | ||||
| Browns Bank | South | 22 | 13 |
Bioproject number for Data Availability of each dataset is included.