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. Author manuscript; available in PMC: 2020 Jun 3.
Published in final edited form as: Dev Cell. 2019 Apr 25;49(5):711–730.e8. doi: 10.1016/j.devcel.2019.04.001
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
α Tubulin Antibody (B-7) Alexa Fluor®647 Santa Cruz Biotechnology sc-5286 AF647
gamma Tubulin Polyclonal Antibody, Cyanine3 Thermo Fisher PA1–28043
Bacterial and Virus Strains
E. coli Rosetta (DE3) Millipore 70954
Bac-to-Bac Baculovirus Expression System Thermo Fischer Scientific 10359016
Chemicals, Peptides, and Recombinant Proteins
TEV Protease This Paper N/A
HyCloneTM CCM3 SFM GE Life Sciences SH30065.02
Thrombin Protease GE Life Sciences 27084601
PreScission Protease This Paper N/A
isopropylthiogalactoside Sigma Aldrich I675
TWEEN® 20 Sigma Aldrich P1379
IGEPAL® CA-630 Sigma Aldrich I8896
ATP Jena Bioscience NU-1010
ADP Sigma Aldrich A2754
ATPyS Jena Bioscience NU-406
AMPPNP Jena Bioscience NU-407
GMPCPP Jena Bioscience NU-405
GTP Sigma Aldrich G8877
Beryllium Sulfate Sigma Aldrich 202789
Sodium Fluoride Sigma Aldrich 201154
Pierce™ Bond-Breaker™ TCEP Solution Thermo Fischer Scientific PI-77720
Tubulin PurSolutions 32005
Tubulin Cytoskeleton T240
Tubulin X-Rhodamine Labeled Cytoskeleton TL620M
Tubulin HiLyte647 Labeled Cytoskeleton TL670M
Biotin-PEG-SVA Laysan Bio #Biotin-PEG-SVA-5000
mPEG-Succinimidyl Valerate Laysan Bio #NH2-PEG-VA-5K
1,4-piperazinediethanesulfonic acid Sigma Aldrich P6757
Ethylene glycol tetraacetic acid Sigma Aldrich 3777
Methyl cellulose Sigma Aldrich M0512
Paclitaxel Sigma Aldrich T7402
2-Mercaptoethanol Sigma Aldrich M-6250
Neutravidin Thermo Fischer Scientific A2666
GelCodeTM Blue Stain Thermo Fischer Scientific PI24592
SAG Fischer Scientific 56–666
ProLong™ Diamond Antifade Mountant Thermo Fischer Scientific P36961
[a-32P] ATP PerkinElmer BLU003H250UC
Cellulose PEI TLC Millipore 105579
1.2/1.3 400-mesh grids Electron Microscopy Services CF413
Catalase Sigma Aldrich C40
Glucose Oxidase Sigma Aldrich G2133
6His-TEV-Kif7DM1–543-GFP This paper N/A
6His-TEV-Kif7DM1–543 This paper N/A
6His-TEV-Kif7DM-L124K-GFP This paper N/A
6His-TEV-Kif7DM-L123A-GFP This paper N/A
6His-TEV-Kif7DM-L8KHC-GFP This paper N/A
6His-TEV-Kif7DM-L10KHC-GFP This paper N/A
6His-TEV-Kif7MM1–386 This paper N/A
6His-TEV-Kif7MM1–386-GFP This paper N/A
6His-TEV-Kif7MM-L10 This paper N/A
Strep-PreScission-Clasp1(654–1455)-GFP-TEV-6His This paper N/A
6His-Thrombin-EB1-GFP Laboratory of Mike Blower N/A
Critical Commercial Assays
Q5® Site-Directed Mutagenesis Kit NEB E0554S
EnzChek™ Phosphate Assay Kit Invitrogen E6646
Anti-Penta-HIS biosensor Chip ForteBio His1K
Amine Reactive Second-Generation Biosensors ForteBio AR2G
Deposited Data
ADP-bound Kif7 atomic model Protein Data Bank Archive 4A14
Taxol stabilized Sus scrofa tubulin atomic model Protein Data Bank Archive 3J6G
Taxol stabilized Sus scrofa tubulin electron density Electron Microscopy Data Bank EMD-5897
GmpCpp stabilized Sus scrofa tubulin electron density Electron Microscopy Data Bank EMD-5895
ATP analog-bound kinesin-1 H. Sapiens on tubulin atomic model Protein Data Bank Archive 3J8Y
ATP analog-bound kinesin-1 H. Sapiens on tubulin electron density Electron Microscopy Data Bank EMD-6188
ADP-Mg-AlFx-bound kinesin motor domain in complex with tubulin atomic model Protein Data Bank Archive 4HNA
HsMCAK motor domain complex atomic model Protein Data Bank Archive 4UBF
Hs Kinesin-1 motor domain atomic model Protein Data Bank Archive 1BG2
ADP-bound kinesin-3 on microtubules atomic model Protein Data Bank Archive 4UXS
ADP-bound kinesin-3 on microtubules electron density Electron Microscopy Data Bank EMD-2768
AMPPNP-bound kinesin-3 on microtubules atomic model Protein Data Bank Archive 4UXP
AMPPNP-bound kinesin-3 on microtubules electron density Electron Microscopy Data Bank EMD-2766
AMPPNP-bound Hs Kif7 motor domain on GDP-taxol microtubules atomic model This work 6MLR
AMPPNP-bound Hs Kif7 motor domain on GDP-taxol microtubules electron density This work EMD-9141
ADP-bound Hs Kif7 motor domain on GDP-taxol microtubules atomic model This work 6MLQ
ADP-bound Hs Kif7 motor domain on GDP-taxol microtubules electron density This work EMD-9140
Experimental Models: Cell Lines
C3H10T1/2 Lab of Stephane Angers
Recombinant DNA
pI-SUMOstar-6His-TEV-Kif7DM1–543-GFP This paper RS177 (Subramanian Lab Collection)
pI-SUMOstar-6His-TEV-Kif7DM1–543 This paper RS168 (Subramanian Lab Collection)
pI-SUMOstar-6His-TEV-Kif7DM-L124K-GFP This paper SJ034 (Subramanian Lab Collection)
pI-SUMOstar-6His-TEV-Kif7DM-L123A-GFP This paper SJ035 (Subramanian Lab Collection)
pI-SUMOstar-6His-TEV-Kif7DM-L8KHC-GFP This paper SJ045 (Subramanian Lab Collection)
pI-SUMOstar-6His-TEV-Kif7DM-L10KHC-GFP This paper SJ042 (Subramanian Lab Collection)
pET28a-Kif7MM1–386 This paper SJ029 (Subramanian Lab Collection)
pET30a-Kif7MM1–386-GFP This paper SJ051 (Subramanian Lab Collection)
pET28a-Kif7MM-L10 This paper SJ055 (Subramanian Lab Collection)
pFastBac-Strep-PreScission-Clasp1(654–1455)-GFP-TEV-6His This paper NM503 (Subramanian Lab Collection)
pET30a-EB1-GFP Laboratory of Mike Blower pMB283 (Blower Lab Collection)
CMV-Kif7-GFP This paper pk13 (Subramanian Lab Collection)
CMV-Kif7–3A-GFP This paper pk28 (Subramanian Lab Collection)
CMV-Kif7–4K-GFP This paper pk13 (Subramanian Lab Collection)
CMV-Kif7-L10-GFP This paper pk13 (Subramanian Lab Collection)
Software and Algorithms
Matlab Mathworks https://www.mathworks.com
ImageJ NIH https://imagej.nih.gov/ij/
NIS Elements Nikon https://www.nikoninstruments.com/Products/Software
Octet Analysis ForteBio http://www.fortebio.com/octet-platform.html
UCSF Chimera RBVI https://www.cgl.ucsf.edu/chimera/
Appion Lander et al., 2009 http://emg.nysbc.org/redmine/
projects/appion/wiki/Appion_Home
Leginon Suloway et al., 2005 http://emg.nysbc.org/redmine/
projects/leginon/wiki/Leginon_Homepage
MotionCor Li et al., 2013, Hirschi et al., 2017 http://msg.ucsf.edu/em/software/motioncor2.html
CTFFIND4 Rohou and Grigorieff, 2015 http://grigoriefflab.janelia.org/ctffind4
EMAN2 Tang et al., 2007 https://blake.bcm.edu/emanwiki/EMAN2
FREALIGN Grigorieff, 2007
Image Studio Lite LI-COR https://www.licor.com/bio/products/
software/image_studio_lite/
Octet Data Analysis ForteBio https://www.fortebio.com/octet-software.html
phenix.real_space_refine Afonine et al., 2013 https://www.phenix-online.org/documentation/reference/
real_space_refine.html
Prism GraphPad https://www.graphpad.com/scientific-software/prism/
Coot Emsley and Cowtan, 2004 https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
Contact Winn et al., 2011 http://www.ccp4.ac.uk/html/contact.html
PDBSUM de Beer et al., 2014 www.ebi.ac.uk/pdbsum
APBS Jurrus et al., 2018 http://nbcr-222.ucsd.edu/pdb2pqr_2.1.1/
Clustal Omega Sievers et al., 2011 https://www.ebi.ac.uk/Tools/msa/clustalo/
Curvature Analysis Algorithm Bechstedt et al., 2014 Lab of Gary Brouhard