REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
α Tubulin Antibody (B-7) Alexa Fluor®647 | Santa Cruz Biotechnology | sc-5286 AF647 |
gamma Tubulin Polyclonal Antibody, Cyanine3 | Thermo Fisher | PA1–28043 |
Bacterial and Virus Strains | ||
E. coli Rosetta (DE3) | Millipore | 70954 |
Bac-to-Bac Baculovirus Expression System | Thermo Fischer Scientific | 10359016 |
Chemicals, Peptides, and Recombinant Proteins | ||
TEV Protease | This Paper | N/A |
HyCloneTM CCM3 SFM | GE Life Sciences | SH30065.02 |
Thrombin Protease | GE Life Sciences | 27084601 |
PreScission Protease | This Paper | N/A |
isopropylthiogalactoside | Sigma Aldrich | I675 |
TWEEN® 20 | Sigma Aldrich | P1379 |
IGEPAL® CA-630 | Sigma Aldrich | I8896 |
ATP | Jena Bioscience | NU-1010 |
ADP | Sigma Aldrich | A2754 |
ATPyS | Jena Bioscience | NU-406 |
AMPPNP | Jena Bioscience | NU-407 |
GMPCPP | Jena Bioscience | NU-405 |
GTP | Sigma Aldrich | G8877 |
Beryllium Sulfate | Sigma Aldrich | 202789 |
Sodium Fluoride | Sigma Aldrich | 201154 |
Pierce™ Bond-Breaker™ TCEP Solution | Thermo Fischer Scientific | PI-77720 |
Tubulin | PurSolutions | 32005 |
Tubulin | Cytoskeleton | T240 |
Tubulin X-Rhodamine Labeled | Cytoskeleton | TL620M |
Tubulin HiLyte647 Labeled | Cytoskeleton | TL670M |
Biotin-PEG-SVA | Laysan Bio | #Biotin-PEG-SVA-5000 |
mPEG-Succinimidyl Valerate | Laysan Bio | #NH2-PEG-VA-5K |
1,4-piperazinediethanesulfonic acid | Sigma Aldrich | P6757 |
Ethylene glycol tetraacetic acid | Sigma Aldrich | 3777 |
Methyl cellulose | Sigma Aldrich | M0512 |
Paclitaxel | Sigma Aldrich | T7402 |
2-Mercaptoethanol | Sigma Aldrich | M-6250 |
Neutravidin | Thermo Fischer Scientific | A2666 |
GelCodeTM Blue Stain | Thermo Fischer Scientific | PI24592 |
SAG | Fischer Scientific | 56–666 |
ProLong™ Diamond Antifade Mountant | Thermo Fischer Scientific | P36961 |
[a-32P] ATP | PerkinElmer | BLU003H250UC |
Cellulose PEI TLC | Millipore | 105579 |
1.2/1.3 400-mesh grids | Electron Microscopy Services | CF413 |
Catalase | Sigma Aldrich | C40 |
Glucose Oxidase | Sigma Aldrich | G2133 |
6His-TEV-Kif7DM1–543-GFP | This paper | N/A |
6His-TEV-Kif7DM1–543 | This paper | N/A |
6His-TEV-Kif7DM-L124K-GFP | This paper | N/A |
6His-TEV-Kif7DM-L123A-GFP | This paper | N/A |
6His-TEV-Kif7DM-L8KHC-GFP | This paper | N/A |
6His-TEV-Kif7DM-L10KHC-GFP | This paper | N/A |
6His-TEV-Kif7MM1–386 | This paper | N/A |
6His-TEV-Kif7MM1–386-GFP | This paper | N/A |
6His-TEV-Kif7MM-L10 | This paper | N/A |
Strep-PreScission-Clasp1(654–1455)-GFP-TEV-6His | This paper | N/A |
6His-Thrombin-EB1-GFP | Laboratory of Mike Blower | N/A |
Critical Commercial Assays | ||
Q5® Site-Directed Mutagenesis Kit | NEB | E0554S |
EnzChek™ Phosphate Assay Kit | Invitrogen | E6646 |
Anti-Penta-HIS biosensor Chip | ForteBio | His1K |
Amine Reactive Second-Generation Biosensors | ForteBio | AR2G |
Deposited Data | ||
ADP-bound Kif7 atomic model | Protein Data Bank Archive | 4A14 |
Taxol stabilized Sus scrofa tubulin atomic model | Protein Data Bank Archive | 3J6G |
Taxol stabilized Sus scrofa tubulin electron density | Electron Microscopy Data Bank | EMD-5897 |
GmpCpp stabilized Sus scrofa tubulin electron density | Electron Microscopy Data Bank | EMD-5895 |
ATP analog-bound kinesin-1 H. Sapiens on tubulin atomic model | Protein Data Bank Archive | 3J8Y |
ATP analog-bound kinesin-1 H. Sapiens on tubulin electron density | Electron Microscopy Data Bank | EMD-6188 |
ADP-Mg-AlFx-bound kinesin motor domain in complex with tubulin atomic model | Protein Data Bank Archive | 4HNA |
HsMCAK motor domain complex atomic model | Protein Data Bank Archive | 4UBF |
Hs Kinesin-1 motor domain atomic model | Protein Data Bank Archive | 1BG2 |
ADP-bound kinesin-3 on microtubules atomic model | Protein Data Bank Archive | 4UXS |
ADP-bound kinesin-3 on microtubules electron density | Electron Microscopy Data Bank | EMD-2768 |
AMPPNP-bound kinesin-3 on microtubules atomic model | Protein Data Bank Archive | 4UXP |
AMPPNP-bound kinesin-3 on microtubules electron density | Electron Microscopy Data Bank | EMD-2766 |
AMPPNP-bound Hs Kif7 motor domain on GDP-taxol microtubules atomic model | This work | 6MLR |
AMPPNP-bound Hs Kif7 motor domain on GDP-taxol microtubules electron density | This work | EMD-9141 |
ADP-bound Hs Kif7 motor domain on GDP-taxol microtubules atomic model | This work | 6MLQ |
ADP-bound Hs Kif7 motor domain on GDP-taxol microtubules electron density | This work | EMD-9140 |
Experimental Models: Cell Lines | ||
C3H10T1/2 | Lab of Stephane Angers | |
Recombinant DNA | ||
pI-SUMOstar-6His-TEV-Kif7DM1–543-GFP | This paper | RS177 (Subramanian Lab Collection) |
pI-SUMOstar-6His-TEV-Kif7DM1–543 | This paper | RS168 (Subramanian Lab Collection) |
pI-SUMOstar-6His-TEV-Kif7DM-L124K-GFP | This paper | SJ034 (Subramanian Lab Collection) |
pI-SUMOstar-6His-TEV-Kif7DM-L123A-GFP | This paper | SJ035 (Subramanian Lab Collection) |
pI-SUMOstar-6His-TEV-Kif7DM-L8KHC-GFP | This paper | SJ045 (Subramanian Lab Collection) |
pI-SUMOstar-6His-TEV-Kif7DM-L10KHC-GFP | This paper | SJ042 (Subramanian Lab Collection) |
pET28a-Kif7MM1–386 | This paper | SJ029 (Subramanian Lab Collection) |
pET30a-Kif7MM1–386-GFP | This paper | SJ051 (Subramanian Lab Collection) |
pET28a-Kif7MM-L10 | This paper | SJ055 (Subramanian Lab Collection) |
pFastBac-Strep-PreScission-Clasp1(654–1455)-GFP-TEV-6His | This paper | NM503 (Subramanian Lab Collection) |
pET30a-EB1-GFP | Laboratory of Mike Blower | pMB283 (Blower Lab Collection) |
CMV-Kif7-GFP | This paper | pk13 (Subramanian Lab Collection) |
CMV-Kif7–3A-GFP | This paper | pk28 (Subramanian Lab Collection) |
CMV-Kif7–4K-GFP | This paper | pk13 (Subramanian Lab Collection) |
CMV-Kif7-L10-GFP | This paper | pk13 (Subramanian Lab Collection) |
Software and Algorithms | ||
Matlab | Mathworks | https://www.mathworks.com |
ImageJ | NIH | https://imagej.nih.gov/ij/ |
NIS Elements | Nikon | https://www.nikoninstruments.com/Products/Software |
Octet Analysis | ForteBio | http://www.fortebio.com/octet-platform.html |
UCSF Chimera | RBVI | https://www.cgl.ucsf.edu/chimera/ |
Appion | Lander et al., 2009 |
http://emg.nysbc.org/redmine/ projects/appion/wiki/Appion_Home |
Leginon | Suloway et al., 2005 |
http://emg.nysbc.org/redmine/ projects/leginon/wiki/Leginon_Homepage |
MotionCor | Li et al., 2013, Hirschi et al., 2017 | http://msg.ucsf.edu/em/software/motioncor2.html |
CTFFIND4 | Rohou and Grigorieff, 2015 | http://grigoriefflab.janelia.org/ctffind4 |
EMAN2 | Tang et al., 2007 | https://blake.bcm.edu/emanwiki/EMAN2 |
FREALIGN | Grigorieff, 2007 | |
Image Studio Lite | LI-COR |
https://www.licor.com/bio/products/ software/image_studio_lite/ |
Octet Data Analysis | ForteBio | https://www.fortebio.com/octet-software.html |
phenix.real_space_refine | Afonine et al., 2013 |
https://www.phenix-online.org/documentation/reference/ real_space_refine.html |
Prism | GraphPad | https://www.graphpad.com/scientific-software/prism/ |
Coot | Emsley and Cowtan, 2004 | https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ |
Contact | Winn et al., 2011 | http://www.ccp4.ac.uk/html/contact.html |
PDBSUM | de Beer et al., 2014 | www.ebi.ac.uk/pdbsum |
APBS | Jurrus et al., 2018 | http://nbcr-222.ucsd.edu/pdb2pqr_2.1.1/ |
Clustal Omega | Sievers et al., 2011 | https://www.ebi.ac.uk/Tools/msa/clustalo/ |
Curvature Analysis Algorithm | Bechstedt et al., 2014 | Lab of Gary Brouhard |