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. 2019 Apr 15;16(7):960–971. doi: 10.1080/15476286.2019.1602438

Table 1.

RNA binding parameters of AUF1 p45 and its variants.

  AU/GU-rich RNA
random RNA
Protein KD (nM)a KD ratiob ΔΔG (kJ/mol)c KD (nM)a KD ratiob ΔΔG (kJ/mol)c
AUF1 p45 WT 1.6 ± 0.5 1 0 157 ± 24 1 0
AUF1 p45 RRM1mut 25 ± 3.2 16 6.8 1260 ± 217 8 5.1
AUF1 p45 RRM2mut 24 ± 3.4 15 6.7 414 ± 49 2.6 2.4
AUF1 p45 RRM1 + 2mut 1040 ± 290 650 15.9 4170 ± 909 27 8.9
AUF1 p45 RGG5K 4.3 ± 1.0 2.7 2.4 314 ± 50 2 1.7
AUF1 p45 RGG5A 24 ± 3.1 15 6.7 2840 ± 191 18 7.1

aDissociation constants and standard deviations derived from at least three measurements.

bKD ratio was calculated to compare binding of wildtype (WT) vs protein variant.

cThe Gibbs free energy difference between a WT-RNA complex and a variant-RNA complex was calculated as follows: ΔΔG = -RT ln(KD WT/KD variant).