Table 1.
AU/GU-rich RNA |
random RNA |
|||||
---|---|---|---|---|---|---|
Protein | KD (nM)a | KD ratiob | ΔΔG (kJ/mol)c | KD (nM)a | KD ratiob | ΔΔG (kJ/mol)c |
AUF1 p45 WT | 1.6 ± 0.5 | 1 | 0 | 157 ± 24 | 1 | 0 |
AUF1 p45 RRM1mut | 25 ± 3.2 | 16 | 6.8 | 1260 ± 217 | 8 | 5.1 |
AUF1 p45 RRM2mut | 24 ± 3.4 | 15 | 6.7 | 414 ± 49 | 2.6 | 2.4 |
AUF1 p45 RRM1 + 2mut | 1040 ± 290 | 650 | 15.9 | 4170 ± 909 | 27 | 8.9 |
AUF1 p45 RGG5K | 4.3 ± 1.0 | 2.7 | 2.4 | 314 ± 50 | 2 | 1.7 |
AUF1 p45 RGG5A | 24 ± 3.1 | 15 | 6.7 | 2840 ± 191 | 18 | 7.1 |
aDissociation constants and standard deviations derived from at least three measurements.
bKD ratio was calculated to compare binding of wildtype (WT) vs protein variant.
cThe Gibbs free energy difference between a WT-RNA complex and a variant-RNA complex was calculated as follows: ΔΔG = -RT ln(KD WT/KD variant).