Table 2.

Number of differentially expressed genes recovered from M. albus and M. siculus when our algorithm is applied to A. thaliana and M. truncatula from libraries associated with one condition versus another condition in the 25_3 assembly, with organism indicating the starting organism and its related organism, SvsC indicating salt tolerance versus control, WvsC indicating waterlogging tolerance versus control, SWvsC indicating salt and waterlogging tolerance versus control, SWvsS indicating salt and waterlogging tolerance versus salt tolerance, and SWvsW indicating salt and waterlogging tolerance versus waterlogging tolerance

Organism	SvsC	WvsC	SWvsC	SWvsS	SWvsW
M. alb to A. tha	8	141	81	47	12
M. sic to A. tha	39	7	10	45	8
M. alb to M. tru	11	220	114	86	17
M. sic to M. tru	74	24	31	84	12