Table 4:
This table shows SVA-adjusted results for the main effects (i.e., of the ASD condition) for the RNA-Seq data (sorted by FDR-adjusted p-value). Note that FDR-adjusted p-values are also shown for an analysis performed without the adjustment of latent batch effects.
| Transcript ID | Gene symbol | Transcript biotype | Log 2 FC | P-adj (SVA) | P-adj (no SVA) |
|---|---|---|---|---|---|
| ENST00000390930 | SNORD17 | snoRNA | −2.98 | 1.54e-05 | 0.0000102 |
| ENST00000410396 | RNU2-2P | snRNA | −4.76 | 4.04e-05 | 0.0000000 |
| ENST00000613119 | snRNA | −3.23 | 9.18e-05 | 0.0000000 | |
| ENST00000258526 | PLXNC1 | protein coding | 0.48 | 0.00468 | 0.4273372 |
| ENST00000393775 | IGSF11 | protein coding | −1.18 | 0.00468 | 1.0000000 |
| ENST00000459255 | SCARNA10 | snoRNA | −1.71 | 0.00468 | 0.0014803 |
| ENST00000618786 | RN7SL1 | misc RNA | −1.35 | 0.0124 | 0.0026454 |