Table 2. Pairwise linkage disequilibrium statistics in synthetic-derived diversity panel classified into sub-genomes and various physical distance classes.
| Parameters | Genome | Classes | |||
|---|---|---|---|---|---|
| 0-10Kb | 11-100 Kb | 100-1000Kb | >1000Kb | ||
| Total pairs | A | 73072 | 259469 | 155402 | 167586 |
| B | 105802 | 371339 | 209739 | 205547 | |
| D | 12833 | 47703 | 41567 | 91475 | |
| Significant pairs | A | 33285 | 117226 | 63333 | 65116 |
| B | 50225 | 169722 | 96122 | 85213 | |
| D | 4600 | 15855 | 14310 | 29608 | |
| Significant pairs (%) | A | 45.55 | 45.18 | 40.75 | 38.86 |
| B | 47.47 | 45.70 | 45.83 | 41.46 | |
| D | 35.84 | 33.24 | 34.43 | 32.37 | |
| Mean r2 | A | 0.22 | 0.18 | 0.16 | 0.14 |
| B | 0.25 | 0.22 | 0.2 | 0.18 | |
| D | 0.36 | 0.30 | 0.23 | 0.20 | |
| Pairs in complete LD (%) | A | 2.97 | 1.60 | 1.35 | 0.78 |
| B | 4.43 | 2.82 | 2.46 | 1.60 | |
| D | 4.75 | 2.91 | 1.84 | 2.30 | |
| Pairs in r2 >0.5 (%) | A | 7.26 | 5.44 | 3.76 | 2.98 |
| B | 8.69 | 6.76 | 6.38 | 4.28 | |
| D | 12.07 | 9.01 | 5.94 | 6.76 | |
| Mean of r2 >0.5 | A | 0.82 | 0.78 | 0.8 | 0.78 |
| B | 0.87 | 0.83 | 0.84 | 0.81 | |
| D | 0.84 | 0.82 | 0.8 | 0.82 | |