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. 2019 Apr 10;9(6):1921–1931. doi: 10.1534/g3.119.400094

Table 6. Prediction accuracy for winter survival of switchgrass populations in Validation data set #2. Predictions were based on GBLUP methods applied to training data sets from Spring 2014 or 2015 and applied to independent populations evaluated in 2017 at Arlington or Madison, WI.

All individuals Putative tetraploids only
Training set GBLUP prediction methoda Number of families Number of SNP markers Spring 2014 Spring 2015 Spring 2014 Spring 2015
All Populations Individual 368 200,933 0.05 0.19 0.17 0.01
Arlington 0.34 0.14 0.46 0.17
Madison 0.05 0.14 0.15 0.00
All Lowland Individual 257 176,581 0.01 0.13 0.20 0.01
Arlington 0.34 0.14 0.46 0.17
Madison 0.05 0.14 0.15 0.00
Southern Lowland Individual 168 141,344 0.51 0.19 0.51 0.25
Arlington 0.79 0.46 0.84 0.49
Madison 0.65 0.24 0.64 0.28
a

Individual: Prediction of individuals that were exactly sequenced. 178 Individuals representing 23 populations from location Madison were sequenced and All individuals comprised all 178 individuals and putative tetraploids comprised 138 individuals. Arlington: prediction of population GEBV at the Arlington location (23 populations for All individuals and 18 populations for putative tetraploids only); Madison: prediction of population GEBV at the Madison location (23 populations for All individuals and 18 populations for putative tetraploids only). GEBV = genomic estimated breeding value.