Table 2. Significant associations for days to flower measured in heat conditions in Nacaome, Hondouras (HN) and Juana Dias, PR (PR) on the BASE_Meso panel in 2016. The MTMM statistical method and scripts (Korte et al. 2012) were used to calculate the marginal associations in HN (DTF HN) and PR (DTF PR), the full mixed trait model (full), and the models that tested for interaction and common effects for the two traits. SNPs that passed the Bonferonni test based on the effective number of markers (n = 463; Gao et al. 2008; -log₁₀ ≥ 4.10) for any of these analyses are shown in bold font. Minor-allele frequency ≥ 0.05.

				MTMM test [-log10(P)]
SNP	Chr	Position	MAF	DF HN	DF PR	Full	Interaction	Common
S01_27685396	1	27,685,396	0.094	6.33	0.36	7.83	2.19	7.07
S01_27685497	1	27,685,497	0.094	6.16	0.49	7.48	1.98	6.90
S02_38071921	2	38,071,921	0.052	5.97	0.85	8.32	2.17	7.60
S03_40276852	3	40,276,852	0.175	6.02	1.49	7.09	1.66	6.78
S03_40412039	3	40,412,039	0.189	5.89	1.58	6.63	1.81	6.18
S03_41096424	3	41,096,424	0.052	6.96	1.55	7.78	1.28	7.84
S03_47356534	3	47,356,534	0.113	7.07	1.65	8.29	1.72	7.98
S11_4021661	11	4,021,661	0.085	5.16	1.75	6.02	0.60	6.57
S11_10662631	11	10,662,631	0.090	5.87	1.26	6.39	0.91	6.72
S11_10662636	11	10,662,636	0.090	5.87	1.26	6.39	0.91	6.72
S11_10662653	11	10,662,653	0.090	5.87	1.26	6.39	0.91	6.72
S11_10662667	11	10,662,667	0.090	5.87	1.26	6.39	0.91	6.72
S11_10662679	11	10,662,679	0.090	5.87	1.26	6.39	0.91	6.72
S11_27278152	11	27,278,152	0.094	6.22	0.36	6.89	1.87	6.39
S11_27278162	11	27,278,162	0.094	6.22	0.36	6.89	1.87	6.39
S11_27278186	11	27,278,186	0.094	6.22	0.36	6.89	1.87	6.39
S11_36223457	11	36,223,457	0.071	5.67	0.34	6.45	1.66	6.13
S11_45290191	11	45,290,191	0.094	5.97	1.02	7.28	1.91	6.77
S11_47305350	11	47,305,350	0.057	6.73	1.88	6.82	1.39	6.76