Table 3. Significant associations for days to flower (DTF) and days to maturity (DTM) measured in Nacaome, Juana Dias, PR on the BASE_Meso panel. The MTMM statistical method and scripts (Korte et al. 2012) were used to calculate the marginal associations for DTF and DTM, the full mixed trait model (full), and the models that tested for interaction and common effects for the two traits. SNPs that passed the Bonferonni test based on the effective number of markers (n = 463; Gao et al. 2008; -log10 ≥ 4.10) are shown in bold font and underlined. Minor-allele frequency ≥ 0.05.
| MTMM test [-log10(P)] | ||||||||
|---|---|---|---|---|---|---|---|---|
| SNP | Chr | Position | MAF | DTF | DTM | Full | Interaction | Common |
| S03_51487987 | 3 | 51,487,987 | 0.08 | 0.76 | 4.20 | 5.32 | 3.54 | 3.13 |
| S03_51737958 | 3 | 51,737,958 | 0.13 | 2.01 | 5.43 | 5.69 | 2.52 | 4.52 |
| S03_51737987 | 3 | 51,737,987 | 0.11 | 2.10 | 5.19 | 5.46 | 2.39 | 4.41 |
| S03_51773012 | 3 | 51,773,012 | 0.11 | 2.10 | 5.19 | 5.46 | 2.39 | 4.41 |
| S03_51773026 | 3 | 51,773,026 | 0.11 | 2.10 | 5.19 | 5.46 | 2.39 | 4.41 |
| S03_51977930 | 3 | 51,977,930 | 0.08 | 0.63 | 4.03 | 5.23 | 3.60 | 2.96 |
| S03_51978029 | 3 | 51,978,029 | 0.08 | 0.63 | 4.03 | 5.23 | 3.60 | 2.96 |
| S03_51978076 | 3 | 51,978,076 | 0.08 | 0.63 | 4.03 | 5.23 | 3.60 | 2.96 |
| S03_52011377 | 3 | 52,011,377 | 0.08 | 0.63 | 4.03 | 5.23 | 3.60 | 2.96 |
| S03_52321115 | 3 | 52,321,115 | 0.09 | 0.57 | 4.01 | 5.14 | 3.57 | 2.90 |
| S03_52607649 | 3 | 52,607,649 | 0.08 | 0.09 | 3.58 | 5.54 | 4.55 | 2.32 |
| S04_46335883 | 4 | 46,335,883 | 0.40 | 1.11 | 4.33 | 5.07 | 2.72 | 3.68 |
| S04_47068592 | 4 | 47,068,592 | 0.28 | 2.13 | 6.35 | 6.86 | 2.81 | 5.47 |
| S08_24957350 | 8 | 24,957,350 | 0.20 | 0.08 | 3.82 | 5.13 | 3.89 | 2.56 |