Table 3. Summaries of Poly(A)-Clusters annotated using 3′READs+ and PAS-Seq datasets.

Strategy	Article	Genome	Raw Reads	Processed Reads	PACs discovered	Parameters Used (other than default)
3′READs+50SE HiSeq	(Zheng et al. 2016)	hg19 Homo sapiens	29,820,497 4 datasets	2,519,867	21,532 Total, 15,599 Exonic, 2,081 Intronic, 3,852 Intergenic	‘-c’ (Reverse Complement), ‘-a 10’ (Minimum A-tract length), ‘-l 25’ (Minimum read length)
PAS-Seq 100SE HiSeq	(Chang et al. 2018)	mm10 Mus musculus	83,224,679 4 datasets	37,663,516	34,156 Total, 19,922 Exonic, 4,834 Intronic, 9,402 Intergenic	‘-a 10’ (Minimum A-tract length)