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. 2019 Apr 8;212(2):553–564. doi: 10.1534/genetics.119.302022

Table 1. Overview of the scenarios explored.

Scenarios wmin wmax nini f
1–5 0 0.1 50, 100, 250, 500, 1000 2
6–10 0 0.1 50, 100, 250, 500, 1000 10
11–15 0.45 0.55 50, 100, 250, 500, 1000 2
16–20 0.45 0.55 50, 100, 250, 500, 1000 10
21–25 0.2 0.6 50, 100, 250, 500, 1000 2
26–30 0.2 0.6 50, 100, 250, 500, 1000 10
31–35 0.3 0.7 50, 100, 250, 500, 1000 2
36–40 0.3 0.7 50, 100, 250, 500, 1000 10
41–45 0.4 0.8 50, 100, 250, 500, 1000 2
46–50 0.4 0.8 50, 100, 250, 500, 1000 10
51–55 0.1 0.9 50, 100, 250, 500, 1000 2
56–60 0.1 0.9 50, 100, 250, 500, 1000 10
61–65 0.0 1.0 50, 100, 250, 500, 1000 2
66–70 0.0 1.0 50, 100, 250, 500, 1000 10
71–75 0.9 1.0 50, 100, 250, 500, 1000 2
76–80 0.9 1.0 50, 100, 250, 500, 1000 10

We chose the scenarios to reflect a wide range of possible biological systems and provide results of general applicability. The minimum and maximum intrinsic merits wmin and wmax were chosen to capture situations where both are low (scenarios 1–10), high (scenarios 71–80), where wmin is low and wmax high (scenarios 51–70), or both are intermediate. The initial number of alleles is generally not known, but as > 100 alleles have been found for a number of mammalian species (see above), we also explored larger values for nini, as well as different epitope-recognition site sequence lengths, varying f to cover situations where the individuals are exposed to fewer or more pathogens.