Table 1. Overview of the scenarios explored.
Scenarios | nini | f | ||
---|---|---|---|---|
1–5 | 0 | 0.1 | 50, 100, 250, 500, 1000 | 2 |
6–10 | 0 | 0.1 | 50, 100, 250, 500, 1000 | 10 |
11–15 | 0.45 | 0.55 | 50, 100, 250, 500, 1000 | 2 |
16–20 | 0.45 | 0.55 | 50, 100, 250, 500, 1000 | 10 |
21–25 | 0.2 | 0.6 | 50, 100, 250, 500, 1000 | 2 |
26–30 | 0.2 | 0.6 | 50, 100, 250, 500, 1000 | 10 |
31–35 | 0.3 | 0.7 | 50, 100, 250, 500, 1000 | 2 |
36–40 | 0.3 | 0.7 | 50, 100, 250, 500, 1000 | 10 |
41–45 | 0.4 | 0.8 | 50, 100, 250, 500, 1000 | 2 |
46–50 | 0.4 | 0.8 | 50, 100, 250, 500, 1000 | 10 |
51–55 | 0.1 | 0.9 | 50, 100, 250, 500, 1000 | 2 |
56–60 | 0.1 | 0.9 | 50, 100, 250, 500, 1000 | 10 |
61–65 | 0.0 | 1.0 | 50, 100, 250, 500, 1000 | 2 |
66–70 | 0.0 | 1.0 | 50, 100, 250, 500, 1000 | 10 |
71–75 | 0.9 | 1.0 | 50, 100, 250, 500, 1000 | 2 |
76–80 | 0.9 | 1.0 | 50, 100, 250, 500, 1000 | 10 |
We chose the scenarios to reflect a wide range of possible biological systems and provide results of general applicability. The minimum and maximum intrinsic merits and were chosen to capture situations where both are low (scenarios 1–10), high (scenarios 71–80), where is low and high (scenarios 51–70), or both are intermediate. The initial number of alleles is generally not known, but as > 100 alleles have been found for a number of mammalian species (see above), we also explored larger values for , as well as different epitope-recognition site sequence lengths, varying to cover situations where the individuals are exposed to fewer or more pathogens.