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. Author manuscript; available in PMC: 2020 May 31.
Published in final edited form as: J Mol Biol. 2019 Apr 30;431(12):2354–2368. doi: 10.1016/j.jmb.2019.04.034

Table 3.

Network topology of protease inhibitor resistance-associated sites.

Topology measures
Class Res Subtype Degree Clust Clos Betw
L 36 1a 0.022 0.333 0.211 0.001
1b 0.022 0.167 0.224 0.003
54 1a 0.050 0.250 0.282 0.125
1b 0.050 0.250 0.269 0.100
55 1a 0.050 0.278 0.262 0.052
1b 0.039 0.429 0.249 0.034
170 1a 0.044 0.286 0.257 0.037
1b 0.034 0.400 0.245 0.022
M* 80 1a 0.039 0.476 0.222 0.006
1b 0.034 0.467 0.214 0.007
B 155 1a 0.050 0.278 0.262 0.043
1b 0.056 0.222 0.262 0.072
156 1a 0.028 0.500 0.235 0.007
1b 0.028 0.500 0.229 0.008
168 1a 0.022 0.333 0.222 0.004
1b 0.022 0.167 0.217 0.006

Class: class of compound (L – linear, M – macrocyclic, B – both) (22); Res: residue; Degree: degree centrality; Clust: clustering coefficient; Clos: closeness centrality; Betw: betweenness centrality. All values are rounded for better readability.

*

Exception: Sovaprevir (22)