Table 4.
List of predicted candidate genes in 500-Kb intervals of the qGE6.1 region.
| Chr | Start | Stop | Gene ID | No. of missense SNPs | Putative function |
|---|---|---|---|---|---|
| 6 | 6515548 | 6519199 | LOC_Os06g12170 | 1 | Expressed protein |
| 6 | 6521987 | 6523338 | LOC_Os06g12180 | 1 | Jacalin-like lectin domain containing protein |
| 6 | 6682411 | 6685947 | LOC_Os06g12330 | 1 | Amino acid transporter |
| 6 | 6696666 | 6700782 | LOC_Os06g12360 | 1 | Pentatricopeptide |
| 6 | 6736053 | 6737803 | LOC_Os06g12410 | 1 | GDSL-like lipase/acylhydrolase, |
| 6 | 6758181 | 6762995 | LOC_Os06g12460 | 1 | CSLA3 - cellulose synthase-like family A; mannan synthase |
| 6 | 6503735 | 6514399 | LOC_Os06g12160 | 2 | AAA-type ATPase family protein |
| 6 | 6570778 | 6572727 | LOC_Os06g12230 | 2 | TCP-domain protein, putative |
| 6 | 6754294 | 6755541 | LOC_Os06g12455 | 2 | Expressed protein |
| 6 | 6595940 | 6602476 | LOC_Os06g12260 | 3 | N-rich protein, putative |
| 6 | 6715886 | 6722017 | LOC_Os06g12390 | 3 | Galactosyltransferase family protein |
| 6 | 6484043 | 6488553 | LOC_Os06g12120 | 4 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor |
| 6 | 6748358 | 6753338 | LOC_Os06g12450 | 4 | Soluble starch synthase 2–3, chloroplast precursor |