Antibodies |
Rat anti-CD31 |
BD Biosciences |
Cat# 553370; RRID:AB_563954 |
Rabbit anti-PR |
Cell Signaling |
Cat# 8757s; RRID:AB_2797144 |
Rabbit anti-pStat3 |
Cell Signaling |
Cat#9145s; RRID:AB_2491009 |
Rabbit anti-NFiκB |
Cell Signaling |
Cat# 8242s; RRID:AB_10859369 |
Rabbit anti-pNFiκB |
Cell Signaling |
Cat# 3031s; RRID:AB_330559 |
Rabbit anti-Cox2 |
Cell Signaling |
Cat# 12282s; RRID:AB_2571729 |
Rabbit anti-H3K4me3 |
Cell Signaling |
Cat# 9751s; RRID:AB_2616028 |
Rabbit anti-pS6 |
Cell Signaling |
Cat#2211s; RRID:AB_331679 |
Rabbit anti-S6 |
Cell Signaling |
Cat# 2217s; RRID:AB_331355 |
Rabbit anti-Tubulin |
Cell Signaling |
Cat#2144s; RRID:AB_2210548 |
Rabbit anti-Lamin A/C |
Cell Signaling |
Cat# 2032s; RRID:AB_10694918 |
Rabbit anti-TLR4 |
Cell Signaling |
Cat# 14358s; RRID:AB_2798460 |
Rat anti-CD4 (RM4–5) |
Biolegend |
Cat# 100505; RRID:AB_312708 |
Rat Anti-CD45 |
Biolegend |
Cat# 103102; RRID:AB_312967 |
Rat Anti-Ly6G |
BD Bioscience |
Cat# 551459; RRID:AB_394206 |
Rat Anti-F4/80 |
Bio-Rad |
Cat# MCA497R; RRID:AB_323279 |
Fluorescein labeled Dolichos Biflorus Agglutinin (DBA) |
Vectorlabs |
Cat#FL-1031–2 |
Cy3 AffiniPure Donkey Anti-Rat IgG (H+L) |
Jackson ImmunoResearch |
Cat#712-165-150; RRID:AB_2340666 |
Cy3 AffiniPure Donkey Anti-Goat IgG (H+L) |
Jackson ImmunoResearch |
Cat# 705-165-147; RRID:AB_2307351 |
Alexa Fluor® 594 AffiniPure Donkey Anti-Rabbit IgG (H+L) |
Jackson ImmunoResearch |
Cat# 711-585-152; RRID:AB_2340621 |
Alexa Fluor® 488 AffiniPure Donkey Anti-Rabbit IgG (H+L) |
Jackson ImmunoResearch |
Cat# 711-545-152; RRID:AB_2313584 |
Cy2 AffiniPure Donkey Anti-Rat IgG (H+L) |
Jackson ImmunoResearch |
Cat# 712-225-153; RRID:AB_2340674 |
Chemicals, Peptides, and Recombinant Proteins |
LPS |
Invivogen |
Cat#tlrl-3pelps |
rIL6 |
Peprotech |
Cat# 216–16 |
BSA |
Thermo Scientific |
Cat#AM2616 |
Hoechst 33342 |
Thermo Scientific |
Cat#H1399 |
Anti-IL10 |
Custom made |
N/A |
Deposited Data |
Day 4 uterus RNA-Seq data |
This study |
GEO:GSE116096
|
Day 8 and 16 stromal cells RNA-Seq data |
Nancy et al., 2018 |
SRA: SRP120624 |
Stat3 ChIP-Seq |
Durant et al., 2010 |
SRA: SRX020337 |
H3K4me3 ChIP-Seq |
Choukrallah et al., 2015 |
SRA: SRX668829 |
Experimental Models: Organisms/Strains |
Mouse: Tlr4f/f
|
McAlees et al., 2015 |
N/A |
Mouse: p53f/f
|
Hirota et al., 2010 |
N/A |
Mouse: PgrCre/+
|
Soyal et al., 2005 |
N/A |
Mouse: Tie2Cre/+
|
Kisanuki et al., 2001 |
N/A |
Mouse: Tlr4−/−
|
Hoshino et al., 1999 |
N/A |
Software and Algorithms |
Bowtie2 |
Langmead and Salzberg, 2012 |
http://bowtie-bio.sourceforge.net/bowtie2/index.shtml |
MACS2 |
Zhang et al., 2008 |
https://github.com/taoliu/MACS |
TopHat2 |
Kim et al., 2013 |
https://ccb.jhu.edu/software/tophat/index.shtml |
GraphPad Prism |
GraphPad |
https://www.graphpad.com/scientificsoftware/prism/ |