Table 4. Estimates of diversification in Himalayan vs non-Himalayan lineages using Geographic State Speciation and Extinction (GeoSSE) models.
Net diversification rate | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Biogeo-graphic coding | Models | -lnL | AIC | sA | sB | sAB | dA | dB | xA | xB | Region A sA-xA | Region B sB-xB |
Narrow sense | Reduced full (sA, sB, dA, dB, xA, xB) | 2,673.88 | 5,361.76 | 0.50 | 0.16 | 0 | 0.01 | 0.60 | 0.30 | 1.00E–05 | 0.20 | 0.16 |
Constrained 1 (sAB ∼ 0) | 2,673.88 | 5,359.76 | 0.50 | 0.16 | 0 | 0.01 | 0.60 | 0.30 | 0 | 0.20 | 0.16 | |
Constrained 2 (sA ∼ sB, xA ∼ xB) | 2,699.9 | 5,409.79 | 0.49 | 0.49 | 9.00E–06 | 0.02 | 3.15 | 0.42 | 0.42 | 0.07 | 0.07 | |
Broad sense | Reduced full (sA, sB, dA, dB, xA, xB) | 2,715.04 | 5,444.09 | 0.50 | 0.16 | 9.00E–06 | 0.009 | 0.28 | 0.28 | 2.00E-06 | 0.22 | 0.16 |
Constrained 1 (sAB ∼ 0) | 2,715.04 | 5,442.08 | 0.50 | 0.16 | 0 | 0.009 | 0.28 | 0.28 | 0 | 0.22 | 0.16 | |
Constrained 2 (sA ∼ sB, xA ∼ xB) | 2,754.08 | 5,518.16 | 0.40 | 0.40 | 0 | 0.01 | 0.19 | 0.17 | 0.17 | 0.23 | 0.23 |
Notes.
Abbreviations
- lnL
- log-likelihood
- AIC
- Akaike Information Criterion
- sA, sB
- speciation rate in area A, B
- sAB
- speciation rate in taxa whose distribution includes both areas A and B
- dA, dB
- dispersal from area A to B or B to A respectively
- xA, xB
- extinction rate in area A, B