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. 2019 Jun 7;7:e6792. doi: 10.7717/peerj.6792

Table 4. Estimates of diversification in Himalayan vs non-Himalayan lineages using Geographic State Speciation and Extinction (GeoSSE) models.

In these models, the Himalayas construed broadly or narrowly (see methods) is denoted as area B; areas outside the Himalayas are denoted as area A.

Net diversification rate
Biogeo-graphic coding Models -lnL AIC sA sB sAB dA dB xA xB Region A sA-xA Region B sB-xB
Narrow sense Reduced full (sA, sB, dA, dB, xA, xB) 2,673.88 5,361.76 0.50 0.16 0 0.01 0.60 0.30 1.00E–05 0.20 0.16
Constrained 1 (sAB ∼ 0) 2,673.88 5,359.76 0.50 0.16 0 0.01 0.60 0.30 0 0.20 0.16
Constrained 2 (sA ∼ sB, xA ∼ xB) 2,699.9 5,409.79 0.49 0.49 9.00E–06 0.02 3.15 0.42 0.42 0.07 0.07
Broad sense Reduced full (sA, sB, dA, dB, xA, xB) 2,715.04 5,444.09 0.50 0.16 9.00E–06 0.009 0.28 0.28 2.00E-06 0.22 0.16
Constrained 1 (sAB ∼ 0) 2,715.04 5,442.08 0.50 0.16 0 0.009 0.28 0.28 0 0.22 0.16
Constrained 2 (sA ∼ sB, xA ∼ xB) 2,754.08 5,518.16 0.40 0.40 0 0.01 0.19 0.17 0.17 0.23 0.23

Notes.

Abbreviations

lnL
log-likelihood
AIC
Akaike Information Criterion
sA, sB
speciation rate in area A, B
sAB
speciation rate in taxa whose distribution includes both areas A and B
dA, dB
dispersal from area A to B or B to A respectively
xA, xB
extinction rate in area A, B