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. Author manuscript; available in PMC: 2019 Jun 10.
Published in final edited form as: ACS Chem Biol. 2017 Jan 23;12(3):692–701. doi: 10.1021/acschembio.6b00921

Table 2.

Kinetic parameters for DNA glycosylase reactions.

Enzyme Substrate kobs / min (% product)a
Free Duplex NCP
UDG UOUT 35 ± 2 (99%) 5.8 ± 0.1 (99%)
UMID 21.1 ± 0.6 (95%) 16 ± 2 (11%)
0.22 ± 0.06 (8%)
UIN 11.2 ± 0.6 (96%) 9.5 ± 1.5 (11%)
0.3 ± 0.2 (4%)
hOGG1 8oxoGOUT 5.5 ± 0.2 (93%) 2.7 ± 0.5 (5%)
8oxoGMID 5.6 ± 0.2 (87%) 6 ± 1 (10%)
8oxoGIN 9.0 ± 0.3 (91%) 7 ± 2 (8%)
Fpg 8oxoGOUT 10.0 ± 0.6 (84%) 4.6 ± 0.9 (9%)
8oxoGMID 10 ± 1 (80%) 7 ± 2 (7%)
8oxoGIN 12.2 ± 0.6 (91%) 7 ± 2 (10%)
hAAG HxOUT 0.222 ± 0.006 (95%) 0.080 ± 0.003 (10%)
HxMID 0.0747 ± 0.0009 (82%) 0.082 ± 0.007 (6%)
HxIN 0.05 ± 0.01 (82%) 0.07 ± 0.03 (5%)
εAOUT 0.0433 ± 0.0009 (91%) 0.0111 ± 0.0002 (84%)
εAMID 0.0315 ± 0.0007 (90%) 0.006 ± 0.001 (16%)
εAIN 0.0338 ± 0.0002 (88%) N.R.b
EndoIII 5OHUOUT 10 ± 1 (82%) 1.6 ± 1.0 (5%)
Fpg 5OHUOUT 0.13 ± 0.02 (82%) N.R.b
UDG 5OHUOUT 0.008 ± 0.001 (48%) 0.007 ± 0.004 (3%)
a

Error represents reported standard deviation from fitting by weighted nonlinear least-squares regression.

b

N.R.: No reaction.