Table 4.

GOrilla output of overrepresented pathways involving the 764 commonly differentially methylated gene regions in all 16 pairwise comparisons.

	GO term	Description
Component	GO:0016342	Catenin complex
Process	GO:0007156	Homophilic cell adhesion via plasma membrane adhesion molecules
	GO:0048856	Anatomical structure development
	GO:0098742	Cell-cell adhesion via plasma-membrane adhesion molecules
	GO:0032502	Developmental process
	GO:0098609	Cell-cell adhesion
	GO:0001708	Cell fate specification
	GO:0044057	Regulation of system process
	GO:0048731	System development
	GO:0016339	Calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
	GO:0051148	Negative regulation of muscle cell differentiation
	GO:0042462	Eye photoreceptor cell development
	GO:0048468	Cell development
	GO:0032501	Multicellular organismal process
	GO:0048869	Cellular developmental process
	GO:0023052	Signaling
	GO:0042461	Photoreceptor cell development
	GO:0048666	Neuron development
	GO:0014807	Regulation of somitogenesis
	GO:0021527	Spinal cord association neuron differentiation
	GO:0030534	Adult behavior
	GO:0045944	Positive regulation of transcription by RNA polymerase II
	GO:0022610	Biological adhesion
	GO:0007405	Neuroblast proliferation
	GO:0035137	Hindlimb morphogenesis
	GO:0007155	Cell adhesion
Function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
	GO:0003700	DNA-binding transcription factor activity
	GO:0043565	Sequence-specific DNA binding
	GO:0140110	ranscription regulator activity
	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
	GO:1,990,837	Sequence-specific double-stranded DNA binding
	GO:0044212	Transcription regulatory region DNA binding
	GO:0001067	Regulatory region nucleic acid binding
	GO:0000976	Transcription regulatory region sequence-specific DNA binding
	GO:0022843	Voltage-gated cation channel activity
	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding
	GO:0001012	RNA polymerase II regulatory region DNA binding
	GO:0003690	Double-stranded DNA binding
	GO:0001221	Transcription cofactor binding
	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding
	GO:0001012	RNA polymerase II regulatory region DNA binding
	GO:0003690	Double-stranded DNA binding
	GO:0001221	Transcription cofactor binding
	GO:0099604	Ligand-gated calcium channel activity
	GO:0015278	Calcium-release channel activity
	GO:0005217	Intracellular ligand-gated ion channel activity
	GO:0005251	Delayed rectifier potassium channel activity
	GO:0005509	Calcium ion binding
	GO:0005262	Calcium channel activity