Table 3.
Genes with multiple significant CpGs.
| Ever/Never |
Correlation with gene expression |
|||||
|---|---|---|---|---|---|---|
| Gene/Location | CHR | Probe | p-value | q-value | cor. | p-value |
| LPGAT1 | 1 | cg07097417 | 4.3E-06 | 0.02 | −0.18 | 1.6E-07 |
| 1 | cg07569918 | 4.2E-05 | 0.04 | −0.17 | 9.3E-07 | |
| CTBP1-AS2 | 4 | cg20743744 | 7.8E-06 | 0.03 | NA | NA |
| 4 | cg23835219 | 4.7E-05 | 0.05 | NA | NA | |
| 4 | cg25897951 | 1.6E-05 | 0.03 | NA | NA | |
| MGAT1 | 5 | cg15847249 | 2.6E-05 | 0.04 | NA | NA |
| 5 | cg04671476 | 9.3E-06 | 0.03 | NA | NA | |
| GPR116 | 6 | cg00629395 | 2.7E-05 | 0.04 | 0.07 | 0.03 |
| 6 | cg13975362 | 7.0E-06 | 0.03 | −0.17 | 7.7E-07 | |
| TNRC18 | 7 | cg13030786 | 1.3E-05 | 0.03 | −0.03 | 0.43 |
| 7 | cg08460153 | 2.5E-07 | 0.01 | 0.01 | 0.67 | |
| 7p15 | 7 | cg10083572 | 1.5E-05 | 0.03 | NA | NA |
| 7 | cg14826425 | 4.1E-06 | 0.02 | NA | NA | |
| EEPD1 | 7 | cg17328052 | 8.4E-06 | 0.03 | −0.47 | < 1E-30 |
| 7 | cg26556065 | 7.8E-05 | 0.05 | −0.47 | < 1E-30 | |
| TFPI2 | 7 | cg07380959 | 4.7E-05 | 0.05 | −0.28 | 3.2E-17 |
| 7 | cg03333330 | 3.4E-05 | 0.04 | −0.37 | 8.3E-29 | |
| PTPRN2 | 7 | cg02161503 | 2.2E-05 | 0.04 | 0.63 | < 1E-30 |
| 7 | cg09742643 | 3.5E-05 | 0.04 | 0.75 | < 1E-30 | |
| 7 | cg03899215 | 7.8E-05 | 0.05 | 0.70 | < 1E-30 | |
| ERICH1-AS1 | 8 | cg00602245 | 3.3E-06 | 0.02 | NA | NA |
| 8 | cg14041855 | 4.5E-05 | 0.05 | NA | NA | |
| ARHGEF10 | 8 | cg09126794 | 7.9E-05 | 0.05 | 0.33 | < 1E-30 |
| 8 | cg14390047 | 6.8E-05 | 0.05 | −0.12 | 6.2E-04 | |
| COMMD3-BMI1 | 10 | cg14014799 | 4.9E-05 | 0.05 | −0.04 | 0.19 |
| 10 | cg19378631 | 3.2E-05 | 0.04 | −0.07 | 0.03 | |
| AIFM2 | 10 | cg04859918 | 3.2E-05 | 0.04 | −0.15 | 5.5E-06 |
| 10 | cg00352027 | 1.8E-05 | 0.03 | NA | NA | |
| LOC100188947 | 10 | cg19192065 | 6.5E-05 | 0.05 | 0.20 | 5.9E-09 |
| 10 | cg00526835 | 4.1E-05 | 0.04 | 0.16 | 5.2E-06 | |
| TCERG1L | 10 | cg08975834 | 3.7E-05 | 0.04 | NA | NA |
| 10 | cg10371050 | 2.0E-05 | 0.03 | 0.27 | 5.3E-12 | |
| MICAL2 | 11 | cg23044178 | 8.1E-05 | 0.05 | −0.37 | < 1E-30 |
| 11 | cg04468741 | 4.5E-05 | 0.05 | −0.39 | < 1E-30 | |
| ENOX1 | 13 | cg26872968 | 9.6E-06 | 0.03 | 0.13 | 1.1E-04 |
| 13 | cg10448831 | 2.2E-05 | 0.04 | 0.11 | 1.2E-03 | |
| PNMA1 | 14 | cg10523105 | 3.1E-05 | 0.04 | −0.27 | 4.4E-16 |
| 14 | cg09238801 | 2.4E-05 | 0.04 | −0.30 | 5.4E-20 | |
| ADAMTSL3 | 15 | cg01152302 | 1.5E-05 | 0.03 | −0.07 | 0.05 |
| 15 | cg21377071 | 2.6E-05 | 0.04 | −0.08 | 0.02 | |
| GRB7 | 17 | cg14263391 | 1.1E-05 | 0.03 | −0.34 | < 1E-30 |
| 17 | cg08284496 | 4.6E-05 | 0.05 | −0.30 | 2.5E-19 | |
| 17 | cg11183072 | 9.4E-06 | 0.03 | −0.20 | 6.1E-09 | |
| 17 | cg17740645 | 6.1E-06 | 0.03 | −0.28 | 7.3E-17 | |
| GIPC3 | 19 | cg14202338 | 6.2E-05 | 0.05 | 0.10 | 4.7E-03 |
| 19 | cg07679230 | 2.6E-05 | 0.04 | 0.15 | 4.5E-06 | |
| DDA1 | 19 | cg08142263 | 1.9E-05 | 0.03 | −0.26 | 1.4E-14 |
| 19 | cg10664184 | 7.9E-05 | 0.05 | 0.01 | 0.80 | |
NA = Not Available