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. 2019 Jun 10;9:8435. doi: 10.1038/s41598-019-42514-1

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Whole genome sequencing comparison of mother-infant paired isolates. The genomes of each pair of isolates and 3–6 additional available genomes of the same species were compared by a phylogenomic tree constructed based on all shared genes. The blue and red dots indicate isolates from the precolostrum and oral samples of the baby, respectively. The average values of similarity (average nucleotide identity values) of the genomes for each mother-child pair are shown. Sinteny (conservation in gene order) is shown by lines that join the same fragments.