Table 1.

Comparison of Contig characteristics for the assemblies generated

Assembly	Trinity v20140413	Trinity 2.2.0 kmer 25	Trinity 2.2.0 kmer 31	Oases 0.2.08 Kmer 31–77
Contigs	371,885	593,947	562,115	490,956
MB assembled	305	415	445	705
Average length	822 nt	698 nt	793 nt	1437 nt
Median	442 nt	404 nt	444 nt	1042 nt
N50	1446 nt	1089 nt	1326 nt	2184 nt
%GC	40.77	41.28	41.34	41.28
Blastx TAIR hits> 70%	10,921	11,370	11,708	12,566

MB Megabases, nt nucleotides